Variant report

Variant	rs62087406
Chromosome Location	chr18:9532456-9532457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9528385..9531044-chr18:9532434..9534202,2	K562	blood:
2	chr18:9530961..9533128-chr18:9534267..9536483,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1036930	0.83[ASN][1000 genomes]
rs12327541	0.83[ASN][1000 genomes]
rs16955185	0.91[AFR][1000 genomes]
rs16955297	0.83[ASN][1000 genomes]
rs1942150	0.81[ASN][1000 genomes]
rs2028657	0.83[ASN][1000 genomes]
rs2028659	0.81[ASN][1000 genomes]
rs2277709	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2840354	0.90[ASN][1000 genomes]
rs35234665	0.81[ASN][1000 genomes]
rs35911400	0.81[ASN][1000 genomes]
rs3786174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55841197	0.83[ASN][1000 genomes]
rs56883068	0.83[ASN][1000 genomes]
rs57025551	0.81[ASN][1000 genomes]
rs57539299	0.90[ASN][1000 genomes]
rs58982927	0.90[ASN][1000 genomes]
rs59114729	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59992205	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60290408	0.87[ASN][1000 genomes]
rs61166388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086114	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086115	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086118	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086119	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086120	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086121	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086147	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086151	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086152	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086156	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086158	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087364	0.81[ASN][1000 genomes]
rs62087368	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087370	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087372	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62087378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087402	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087417	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087427	0.87[ASN][1000 genomes]
rs62087456	0.83[ASN][1000 genomes]
rs62088860	0.83[ASN][1000 genomes]
rs62088870	0.83[ASN][1000 genomes]
rs62088872	0.83[ASN][1000 genomes]
rs62088873	0.83[ASN][1000 genomes]
rs62088875	0.83[ASN][1000 genomes]
rs62088876	0.83[ASN][1000 genomes]
rs6506677	0.83[ASN][1000 genomes]
rs7233308	0.83[ASN][1000 genomes]
rs7234355	0.83[ASN][1000 genomes]
rs7237018	0.90[ASN][1000 genomes]
rs7238137	0.83[ASN][1000 genomes]
rs7238375	0.81[ASN][1000 genomes]
rs7240572	0.81[ASN][1000 genomes]
rs7241781	0.81[ASN][1000 genomes]
rs72636719	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73393877	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73393880	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395717	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8099027	0.81[ASN][1000 genomes]
rs894757	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946939	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv428005	chr18:9401658-9542396	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9479000-9533200	Weak transcription	Aorta	Aorta
2	chr18:9479000-9533600	Weak transcription	Gastric	stomach
3	chr18:9495200-9533600	Weak transcription	Right Ventricle	heart
4	chr18:9495400-9534000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr18:9496800-9534000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:9497400-9532600	Weak transcription	Colonic Mucosa	Colon
7	chr18:9500800-9535000	Weak transcription	Fetal Heart	heart
8	chr18:9513200-9534000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:9513600-9537800	Weak transcription	Fetal Brain Male	brain
10	chr18:9517800-9534000	Weak transcription	NHLF	lung
11	chr18:9518200-9533600	Weak transcription	Brain Substantia Nigra	brain
12	chr18:9518800-9534400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr18:9520400-9534800	Weak transcription	Psoas Muscle	Psoas
14	chr18:9521400-9535000	Strong transcription	Fetal Muscle Leg	muscle
15	chr18:9521400-9541800	Strong transcription	Fetal Stomach	stomach
16	chr18:9521600-9540800	Strong transcription	Fetal Thymus	thymus
17	chr18:9521800-9534800	Strong transcription	Fetal Muscle Trunk	muscle
18	chr18:9521800-9540400	Strong transcription	Dnd41	blood
19	chr18:9521800-9540600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr18:9522000-9534800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr18:9522000-9538400	Strong transcription	Primary B cells from peripheral blood	blood
22	chr18:9522000-9538800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr18:9522200-9536200	Strong transcription	HSMM	muscle
24	chr18:9522200-9539000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr18:9522200-9540600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr18:9522400-9534800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr18:9522600-9539200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr18:9522600-9540400	Strong transcription	Fetal Intestine Large	intestine
29	chr18:9523400-9535400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr18:9525000-9533600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr18:9525200-9533600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr18:9525400-9533600	Weak transcription	Brain Angular Gyrus	brain
33	chr18:9525800-9547200	Weak transcription	Stomach Mucosa	stomach
34	chr18:9526400-9534600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr18:9526400-9535400	Strong transcription	Adipose Nuclei	Adipose
36	chr18:9526600-9535000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr18:9526600-9540400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr18:9526800-9552600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr18:9527000-9533400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr18:9527000-9535800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr18:9527400-9533600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr18:9527400-9533600	Weak transcription	Ovary	ovary
43	chr18:9527400-9533800	Weak transcription	Fetal Brain Female	brain
44	chr18:9527600-9546200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr18:9527800-9532800	Weak transcription	Hela-S3	cervix
46	chr18:9528000-9546600	Weak transcription	Fetal Kidney	kidney
47	chr18:9528600-9535600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr18:9528600-9547200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr18:9528800-9535000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr18:9529000-9533200	Weak transcription	Muscle Satellite Cultured Cells	--

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