Variant report

Variant	rs7234355
Chromosome Location	chr18:9587510-9587511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9584254..9588034-chr18:9613364..9615601,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RALBP1-1	chr18:9587384-9587530	ENSG00000266541.1

Variant related genes	Relation type
ENSG00000263627	Chromatin interaction
ENSG00000154845	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1036930	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11081487	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12327541	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955297	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869737	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1869738	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1869739	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2028657	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840354	0.93[ASN][1000 genomes]
rs3786174	0.83[ASN][1000 genomes]
rs55841197	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56883068	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57539299	0.93[ASN][1000 genomes]
rs58800301	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58982927	0.93[ASN][1000 genomes]
rs59114729	0.83[ASN][1000 genomes]
rs59992205	0.83[ASN][1000 genomes]
rs60290408	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61166388	0.83[ASN][1000 genomes]
rs61275183	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086146	0.83[ASN][1000 genomes]
rs62086147	0.83[ASN][1000 genomes]
rs62086151	0.83[ASN][1000 genomes]
rs62086152	0.83[ASN][1000 genomes]
rs62086155	0.83[ASN][1000 genomes]
rs62086156	0.83[ASN][1000 genomes]
rs62086158	0.83[ASN][1000 genomes]
rs62086159	0.83[ASN][1000 genomes]
rs62087363	0.83[ASN][1000 genomes]
rs62087368	0.83[ASN][1000 genomes]
rs62087370	0.83[ASN][1000 genomes]
rs62087371	0.83[ASN][1000 genomes]
rs62087378	0.83[ASN][1000 genomes]
rs62087402	0.83[ASN][1000 genomes]
rs62087403	0.83[ASN][1000 genomes]
rs62087404	0.83[ASN][1000 genomes]
rs62087406	0.83[ASN][1000 genomes]
rs62087407	0.83[ASN][1000 genomes]
rs62087411	0.83[ASN][1000 genomes]
rs62087412	0.83[ASN][1000 genomes]
rs62087414	0.83[ASN][1000 genomes]
rs62087415	0.83[ASN][1000 genomes]
rs62087416	0.83[ASN][1000 genomes]
rs62087417	0.80[ASN][1000 genomes]
rs62087427	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087456	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088860	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088870	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088872	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088873	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088875	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088876	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088880	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62088881	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62088884	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62088885	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62088904	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62088906	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62088908	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6506677	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228280	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7231531	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7233308	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233649	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7235935	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7236274	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7237018	0.93[ASN][1000 genomes]
rs7238137	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7239083	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72945737	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs732698	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73393880	0.83[ASN][1000 genomes]
rs73395717	0.83[ASN][1000 genomes]
rs73395719	0.83[ASN][1000 genomes]
rs8096551	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs894757	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	nsv543644	chr18:9576145-9612516	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9545800-9595200	Strong transcription	Dnd41	blood
2	chr18:9551000-9612200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr18:9553800-9613600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:9563600-9591600	Weak transcription	Colonic Mucosa	Colon
5	chr18:9563600-9594800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr18:9565200-9594200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:9566800-9592600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr18:9566800-9594600	Strong transcription	HSMM	muscle
9	chr18:9568600-9587600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr18:9570400-9594400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr18:9575800-9592800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr18:9576000-9594400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr18:9576200-9587600	Weak transcription	Brain Substantia Nigra	brain
14	chr18:9576200-9589000	Strong transcription	NHDF-Ad	bronchial
15	chr18:9576200-9594000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr18:9576200-9597800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr18:9577600-9594400	Weak transcription	Stomach Mucosa	stomach
18	chr18:9578200-9589200	Strong transcription	Primary B cells from cord blood	blood
19	chr18:9578400-9587800	Weak transcription	Gastric	stomach
20	chr18:9578400-9595200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr18:9578600-9590800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr18:9578800-9594800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr18:9579000-9592600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr18:9579000-9593800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr18:9579600-9591400	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr18:9579600-9594000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr18:9579800-9589000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr18:9579800-9593800	Strong transcription	HUVEC	blood vessel
29	chr18:9580800-9587800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr18:9581000-9594000	Weak transcription	Esophagus	oesophagus
31	chr18:9581000-9595400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr18:9581200-9587600	Weak transcription	Right Ventricle	heart
33	chr18:9581200-9587600	Weak transcription	Thymus	Thymus
34	chr18:9581200-9592800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr18:9581200-9593800	Weak transcription	Aorta	Aorta
36	chr18:9581400-9595800	Weak transcription	Brain Angular Gyrus	brain
37	chr18:9581400-9609200	Weak transcription	Pancreas	Pancrea
38	chr18:9581800-9588000	Weak transcription	Hela-S3	cervix
39	chr18:9582000-9594600	Weak transcription	Psoas Muscle	Psoas
40	chr18:9582000-9597000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr18:9582400-9587600	Weak transcription	HSMMtube	muscle
42	chr18:9582400-9594600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr18:9582600-9587600	Weak transcription	Brain Anterior Caudate	brain
44	chr18:9582800-9594200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr18:9582800-9594400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr18:9582800-9594600	Weak transcription	Fetal Heart	heart
47	chr18:9582800-9597600	Weak transcription	Fetal Brain Male	brain
48	chr18:9583400-9587800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr18:9583400-9587800	Weak transcription	Fetal Kidney	kidney
50	chr18:9583400-9593000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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