Variant report

Variant	rs58982927
Chromosome Location	chr18:9549149-9549150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9541153..9545740-chr18:9546002..9549579,6	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1036930	0.93[ASN][1000 genomes]
rs11081487	0.83[ASN][1000 genomes]
rs12327541	0.93[ASN][1000 genomes]
rs16955297	0.93[ASN][1000 genomes]
rs1869737	0.86[ASN][1000 genomes]
rs1869739	0.86[ASN][1000 genomes]
rs2028657	0.93[ASN][1000 genomes]
rs28365814	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2840354	1.00[ASN][1000 genomes]
rs3786174	0.90[ASN][1000 genomes]
rs55841197	0.93[ASN][1000 genomes]
rs56883068	0.93[ASN][1000 genomes]
rs57539299	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58800301	0.86[ASN][1000 genomes]
rs59114729	0.90[ASN][1000 genomes]
rs59992205	0.90[ASN][1000 genomes]
rs60290408	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61166388	0.90[ASN][1000 genomes]
rs61275183	0.86[ASN][1000 genomes]
rs62086114	0.83[ASN][1000 genomes]
rs62086115	0.83[ASN][1000 genomes]
rs62086118	0.83[ASN][1000 genomes]
rs62086119	0.83[ASN][1000 genomes]
rs62086120	0.83[ASN][1000 genomes]
rs62086121	0.83[ASN][1000 genomes]
rs62086146	0.90[ASN][1000 genomes]
rs62086147	0.90[ASN][1000 genomes]
rs62086151	0.90[ASN][1000 genomes]
rs62086152	0.90[ASN][1000 genomes]
rs62086155	0.90[ASN][1000 genomes]
rs62086156	0.90[ASN][1000 genomes]
rs62086158	0.90[ASN][1000 genomes]
rs62086159	0.90[ASN][1000 genomes]
rs62087363	0.90[ASN][1000 genomes]
rs62087368	0.90[ASN][1000 genomes]
rs62087370	0.90[ASN][1000 genomes]
rs62087371	0.90[ASN][1000 genomes]
rs62087372	0.84[ASN][1000 genomes]
rs62087378	0.90[ASN][1000 genomes]
rs62087402	0.90[ASN][1000 genomes]
rs62087403	0.90[ASN][1000 genomes]
rs62087404	0.90[ASN][1000 genomes]
rs62087406	0.90[ASN][1000 genomes]
rs62087407	0.90[ASN][1000 genomes]
rs62087411	0.90[ASN][1000 genomes]
rs62087412	0.90[ASN][1000 genomes]
rs62087414	0.90[ASN][1000 genomes]
rs62087415	0.90[ASN][1000 genomes]
rs62087416	0.90[ASN][1000 genomes]
rs62087417	0.86[ASN][1000 genomes]
rs62087427	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62087456	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62088860	0.93[ASN][1000 genomes]
rs62088870	0.93[ASN][1000 genomes]
rs62088872	0.93[ASN][1000 genomes]
rs62088873	0.93[ASN][1000 genomes]
rs62088875	0.93[ASN][1000 genomes]
rs62088876	0.93[ASN][1000 genomes]
rs62088880	0.86[ASN][1000 genomes]
rs62088881	0.86[ASN][1000 genomes]
rs62088884	0.86[ASN][1000 genomes]
rs62088885	0.86[ASN][1000 genomes]
rs62088904	0.86[ASN][1000 genomes]
rs62088906	0.86[ASN][1000 genomes]
rs62088908	0.81[ASN][1000 genomes]
rs6506677	0.93[ASN][1000 genomes]
rs7228280	0.81[ASN][1000 genomes]
rs7231531	0.86[ASN][1000 genomes]
rs7233308	0.93[ASN][1000 genomes]
rs7233649	0.86[ASN][1000 genomes]
rs7234355	0.93[ASN][1000 genomes]
rs7235935	0.86[ASN][1000 genomes]
rs7236274	0.86[ASN][1000 genomes]
rs7237018	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7238137	0.93[ASN][1000 genomes]
rs7239083	0.86[ASN][1000 genomes]
rs72636719	0.80[ASN][1000 genomes]
rs72945737	0.86[ASN][1000 genomes]
rs732698	0.86[ASN][1000 genomes]
rs73393877	0.83[ASN][1000 genomes]
rs73393880	0.90[ASN][1000 genomes]
rs73395717	0.90[ASN][1000 genomes]
rs73395719	0.90[ASN][1000 genomes]
rs8093600	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8096551	0.86[ASN][1000 genomes]
rs894757	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9526800-9552600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:9535200-9556800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr18:9541200-9549200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:9543400-9552200	Strong transcription	Fetal Stomach	stomach
5	chr18:9544000-9552200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:9544000-9552400	Strong transcription	Fetal Intestine Small	intestine
7	chr18:9544000-9552600	Strong transcription	Brain Germinal Matrix	brain
8	chr18:9544000-9557000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr18:9544000-9570200	Strong transcription	Fetal Intestine Large	intestine
10	chr18:9544000-9575600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr18:9544200-9552200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:9544200-9553200	Strong transcription	Thymus	Thymus
13	chr18:9544200-9563600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:9544400-9550600	Strong transcription	Fetal Muscle Leg	muscle
15	chr18:9544400-9551400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr18:9544400-9553800	Strong transcription	Spleen	Spleen
17	chr18:9544600-9550000	Strong transcription	Brain Hippocampus Middle	brain
18	chr18:9544600-9550800	Strong transcription	HSMM	muscle
19	chr18:9544600-9552600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr18:9544600-9552600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr18:9544600-9552600	Strong transcription	Fetal Muscle Trunk	muscle
22	chr18:9544600-9561600	Strong transcription	Stomach Smooth Muscle	stomach
23	chr18:9544600-9563600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr18:9544600-9563600	Strong transcription	Brain Cingulate Gyrus	brain
25	chr18:9544600-9564200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr18:9544600-9564200	Strong transcription	Placenta	Placenta
27	chr18:9544800-9549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr18:9544800-9551400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr18:9544800-9552600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr18:9544800-9552800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr18:9544800-9556800	Strong transcription	HMEC	breast
32	chr18:9544800-9557000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr18:9544800-9562000	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr18:9544800-9564600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr18:9544800-9565000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr18:9544800-9572200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr18:9544800-9572400	Strong transcription	Primary T cells from cord blood	blood
38	chr18:9545000-9551600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr18:9545000-9552000	Strong transcription	Brain Anterior Caudate	brain
40	chr18:9545000-9552600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr18:9545000-9552600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr18:9545000-9552600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr18:9545000-9552600	Strong transcription	Fetal Brain Female	brain
44	chr18:9545000-9552800	Strong transcription	Primary hematopoietic stem cells	blood
45	chr18:9545000-9552800	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr18:9545000-9554200	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr18:9545000-9557000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr18:9545000-9557200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr18:9545000-9562600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr18:9545000-9563800	Strong transcription	Osteobl	bone

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