Variant report

Variant	rs62147631
Chromosome Location	chr2:72492585-72492586
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1002415	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10171231	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490039	1.00[ASN][1000 genomes]
rs10490040	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339845	1.00[ASN][1000 genomes]
rs13389007	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007906	1.00[ASN][1000 genomes]
rs17007927	1.00[ASN][1000 genomes]
rs17007929	1.00[ASN][1000 genomes]
rs17007933	1.00[ASN][1000 genomes]
rs17007934	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007937	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192012	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55813510	1.00[ASN][1000 genomes]
rs55994075	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152907	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57013742	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58032693	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58173605	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58339219	1.00[ASN][1000 genomes]
rs59269913	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61391258	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61450122	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147574	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147580	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147581	1.00[ASN][1000 genomes]
rs62147586	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147587	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147588	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147590	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147598	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147601	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147622	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147623	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147625	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147630	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147637	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150087	1.00[ASN][1000 genomes]
rs62150096	1.00[ASN][1000 genomes]
rs62150097	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150118	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150119	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150120	1.00[ASN][1000 genomes]
rs62150123	1.00[ASN][1000 genomes]
rs6705261	1.00[ASN][1000 genomes]
rs6705347	1.00[ASN][1000 genomes]
rs6707549	1.00[ASN][1000 genomes]
rs6748698	1.00[ASN][1000 genomes]
rs72910329	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910330	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910350	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583202	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1005487	chr2:72464784-72819704	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72485200-72501800	Weak transcription	HSMMtube	muscle
2	chr2:72488200-72496600	Weak transcription	Psoas Muscle	Psoas
3	chr2:72489200-72508200	Weak transcription	Aorta	Aorta
4	chr2:72490400-72495800	Weak transcription	Pancreas	Pancrea
5	chr2:72490600-72497200	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:72491200-72495800	Weak transcription	Left Ventricle	heart
7	chr2:72491200-72497000	Weak transcription	Right Atrium	heart
8	chr2:72491200-72502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:72491400-72495800	Weak transcription	Right Ventricle	heart
10	chr2:72491400-72496400	Weak transcription	Fetal Heart	heart
11	chr2:72492200-72498200	Weak transcription	Colon Smooth Muscle	Colon
12	chr2:72492200-72498400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links