Variant report

Variant	rs72910350
Chromosome Location	chr2:72448427-72448428
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72446041..72448733-chr2:72456642..72458989,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1002415	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10171231	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490039	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339845	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389007	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007906	1.00[ASN][1000 genomes]
rs17007927	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007929	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007933	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007934	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007937	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2192012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55813510	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55994075	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152907	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57013742	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58032693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58173605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58339219	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59269913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61391258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61450122	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147581	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147586	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147587	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147588	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147590	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147598	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147600	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147601	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147622	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147623	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147624	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147625	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147627	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147630	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147631	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62147637	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150087	1.00[ASN][1000 genomes]
rs62150096	1.00[ASN][1000 genomes]
rs62150097	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150118	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150119	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150120	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150123	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705261	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705347	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707549	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748698	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910330	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583202	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72432800-72456600	Weak transcription	Psoas Muscle	Psoas
2	chr2:72433000-72460600	Weak transcription	Pancreas	Pancrea
3	chr2:72433200-72450000	Weak transcription	Brain Angular Gyrus	brain
4	chr2:72433200-72450000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
6	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
7	chr2:72433400-72450200	Weak transcription	Brain Anterior Caudate	brain
8	chr2:72438400-72449800	Weak transcription	HMEC	breast
9	chr2:72441000-72462800	Weak transcription	Left Ventricle	heart
10	chr2:72442600-72449400	Weak transcription	Osteobl	bone
11	chr2:72442800-72449800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:72443200-72450000	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:72447000-72450400	Weak transcription	Fetal Heart	heart
14	chr2:72447200-72450000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:72447600-72449200	Weak transcription	A549	lung
16	chr2:72447800-72456400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:72447800-72457000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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