Variant report

Variant	rs62150096
Chromosome Location	chr2:72385182-72385183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72378701..72381631-chr2:72382002..72385410,3	K562	blood:
2	chr2:72384682..72386403-chr2:72579642..72582324,2	K562	blood:

Variant related genes	Relation type
ENSG00000144036	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1002415	1.00[ASN][1000 genomes]
rs10171231	1.00[ASN][1000 genomes]
rs10490039	1.00[ASN][1000 genomes]
rs10490040	1.00[ASN][1000 genomes]
rs13339845	1.00[ASN][1000 genomes]
rs13389007	1.00[ASN][1000 genomes]
rs13407599	0.88[EUR][1000 genomes]
rs17007906	1.00[ASN][1000 genomes]
rs17007927	1.00[ASN][1000 genomes]
rs17007929	1.00[ASN][1000 genomes]
rs17007933	1.00[ASN][1000 genomes]
rs17007934	1.00[ASN][1000 genomes]
rs17007937	1.00[ASN][1000 genomes]
rs2192012	1.00[ASN][1000 genomes]
rs2901091	0.90[EUR][1000 genomes]
rs3768638	0.85[EUR][1000 genomes]
rs3768639	0.83[EUR][1000 genomes]
rs55813510	1.00[ASN][1000 genomes]
rs55994075	1.00[ASN][1000 genomes]
rs56152907	1.00[ASN][1000 genomes]
rs57013742	1.00[ASN][1000 genomes]
rs58032693	1.00[ASN][1000 genomes]
rs58173605	1.00[ASN][1000 genomes]
rs58339219	1.00[ASN][1000 genomes]
rs59269913	1.00[ASN][1000 genomes]
rs61391258	1.00[ASN][1000 genomes]
rs61450122	1.00[ASN][1000 genomes]
rs62147574	1.00[ASN][1000 genomes]
rs62147580	1.00[ASN][1000 genomes]
rs62147581	1.00[ASN][1000 genomes]
rs62147586	1.00[ASN][1000 genomes]
rs62147587	1.00[ASN][1000 genomes]
rs62147588	1.00[ASN][1000 genomes]
rs62147590	1.00[ASN][1000 genomes]
rs62147598	1.00[ASN][1000 genomes]
rs62147600	1.00[ASN][1000 genomes]
rs62147601	1.00[ASN][1000 genomes]
rs62147622	1.00[ASN][1000 genomes]
rs62147623	1.00[ASN][1000 genomes]
rs62147624	1.00[ASN][1000 genomes]
rs62147625	1.00[ASN][1000 genomes]
rs62147627	1.00[ASN][1000 genomes]
rs62147630	1.00[ASN][1000 genomes]
rs62147631	1.00[ASN][1000 genomes]
rs62147637	1.00[ASN][1000 genomes]
rs62147740	1.00[ASN][1000 genomes]
rs62150087	1.00[ASN][1000 genomes]
rs62150093	0.92[EUR][1000 genomes]
rs62150094	0.92[EUR][1000 genomes]
rs62150097	1.00[ASN][1000 genomes]
rs62150118	1.00[ASN][1000 genomes]
rs62150119	1.00[ASN][1000 genomes]
rs62150120	1.00[ASN][1000 genomes]
rs62150123	1.00[ASN][1000 genomes]
rs6546745	0.92[EUR][1000 genomes]
rs6546747	0.90[EUR][1000 genomes]
rs6705261	1.00[ASN][1000 genomes]
rs6705347	1.00[ASN][1000 genomes]
rs6707549	1.00[ASN][1000 genomes]
rs6710195	0.90[EUR][1000 genomes]
rs6710373	0.90[EUR][1000 genomes]
rs6738598	0.90[EUR][1000 genomes]
rs6738942	0.88[EUR][1000 genomes]
rs6748698	1.00[ASN][1000 genomes]
rs72910329	1.00[ASN][1000 genomes]
rs72910330	1.00[ASN][1000 genomes]
rs72910350	1.00[ASN][1000 genomes]
rs73942504	0.83[AFR][1000 genomes]
rs73942538	0.86[AFR][1000 genomes]
rs73942552	0.86[AFR][1000 genomes]
rs73943348	0.86[AFR][1000 genomes]
rs73943349	0.86[AFR][1000 genomes]
rs73943352	0.86[AFR][1000 genomes]
rs7583202	1.00[ASN][1000 genomes]
rs7596302	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582207	chr2:72329603-72389334	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72381600-72386600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:72385000-72385200	Bivalent Enhancer	Fetal Stomach	stomach

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