Variant report

Variant	rs7583202
Chromosome Location	chr2:72356303-72356304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:72355674..72358266-chr2:72370078..72373463,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000003137	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1002415	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs10171231	1.00[ASN][1000 genomes]
rs10490039	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs10490040	1.00[ASN][1000 genomes]
rs13339845	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs13389007	1.00[ASN][1000 genomes]
rs17007906	1.00[ASN][1000 genomes]
rs17007927	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs17007929	1.00[ASN][1000 genomes]
rs17007933	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs17007934	1.00[ASN][1000 genomes]
rs17007937	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs2192012	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs55813510	1.00[ASN][1000 genomes]
rs55994075	1.00[ASN][1000 genomes]
rs56152907	1.00[ASN][1000 genomes]
rs57013742	1.00[ASN][1000 genomes]
rs58032693	1.00[ASN][1000 genomes]
rs58173605	1.00[ASN][1000 genomes]
rs58339219	1.00[ASN][1000 genomes]
rs59269913	1.00[ASN][1000 genomes]
rs61391258	1.00[ASN][1000 genomes]
rs61450122	1.00[ASN][1000 genomes]
rs62147574	1.00[ASN][1000 genomes]
rs62147580	1.00[ASN][1000 genomes]
rs62147581	1.00[ASN][1000 genomes]
rs62147586	1.00[ASN][1000 genomes]
rs62147587	1.00[ASN][1000 genomes]
rs62147588	1.00[ASN][1000 genomes]
rs62147590	1.00[ASN][1000 genomes]
rs62147598	1.00[ASN][1000 genomes]
rs62147600	1.00[ASN][1000 genomes]
rs62147601	1.00[ASN][1000 genomes]
rs62147622	1.00[ASN][1000 genomes]
rs62147623	1.00[ASN][1000 genomes]
rs62147624	1.00[ASN][1000 genomes]
rs62147625	1.00[ASN][1000 genomes]
rs62147627	1.00[ASN][1000 genomes]
rs62147630	1.00[ASN][1000 genomes]
rs62147631	1.00[ASN][1000 genomes]
rs62147637	1.00[ASN][1000 genomes]
rs62147740	1.00[ASN][1000 genomes]
rs62150087	1.00[ASN][1000 genomes]
rs62150096	1.00[ASN][1000 genomes]
rs62150097	1.00[ASN][1000 genomes]
rs62150118	1.00[ASN][1000 genomes]
rs62150119	1.00[ASN][1000 genomes]
rs62150120	1.00[ASN][1000 genomes]
rs62150123	1.00[ASN][1000 genomes]
rs6705261	1.00[ASN][1000 genomes]
rs6705347	1.00[ASN][1000 genomes]
rs6707549	1.00[ASN][1000 genomes]
rs6748698	1.00[ASN][1000 genomes]
rs72910329	1.00[ASN][1000 genomes]
rs72910330	1.00[ASN][1000 genomes]
rs72910350	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582207	chr2:72329603-72389334	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72352000-72357600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:72353000-72363200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:72353600-72364600	Weak transcription	Right Atrium	heart
4	chr2:72354200-72360000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:72354200-72364600	Weak transcription	Fetal Intestine Small	intestine
6	chr2:72355000-72358800	Weak transcription	Spleen	Spleen
7	chr2:72355000-72362000	Enhancers	Fetal Thymus	thymus
8	chr2:72355200-72356400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr2:72355200-72356600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:72355400-72357200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:72355600-72356400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr2:72355600-72356800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:72355600-72359200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:72355800-72356400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr2:72355800-72357000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:72356000-72356400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
17	chr2:72356000-72356400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:72356200-72356400	Enhancers	Esophagus	oesophagus
19	chr2:72356200-72357200	Weak transcription	Fetal Muscle Leg	muscle
20	chr2:72356200-72357800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:72356200-72363000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:72356200-72363200	Weak transcription	Brain Substantia Nigra	brain

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