Variant report

Variant	rs62237437
Chromosome Location	chr22:31610506-31610507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31608269..31610755-chr22:31686802..31688581,2	MCF-7	breast:
2	chr22:31602053..31603755-chr22:31608562..31611221,2	MCF-7	breast:
3	chr22:31608279..31610812-chr22:31624989..31626527,2	MCF-7	breast:
4	chr22:31608921..31610652-chr22:31638563..31640766,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100100	Chromatin interaction
ENSG00000202019	Chromatin interaction
ENSG00000228839	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12160763	0.92[EUR][1000 genomes]
rs16989519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989617	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16989620	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16989623	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989635	0.88[EUR][1000 genomes]
rs16989638	0.88[EUR][1000 genomes]
rs16989650	0.88[EUR][1000 genomes]
rs17833442	0.80[EUR][1000 genomes]
rs2180142	0.80[EUR][1000 genomes]
rs2232173	0.87[ASN][1000 genomes]
rs55997441	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56136528	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56314242	0.92[EUR][1000 genomes]
rs56385611	0.88[EUR][1000 genomes]
rs62236168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62236170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62236171	0.80[EUR][1000 genomes]
rs62236187	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62236215	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62236218	0.84[EUR][1000 genomes]
rs62236223	0.85[EUR][1000 genomes]
rs62236224	0.85[EUR][1000 genomes]
rs62237366	0.87[ASN][1000 genomes]
rs62237446	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239378	0.80[EUR][1000 genomes]
rs62239379	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73158601	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73160611	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73160614	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs878654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9680589	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1067003	chr22:31558663-31697093	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1058844	chr22:31597104-31725296	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31608000-31611400	Active TSS	GM12878-XiMat	blood
2	chr22:31608800-31639800	Weak transcription	Aorta	Aorta
3	chr22:31609200-31613600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr22:31609200-31613800	Weak transcription	Fetal Kidney	kidney
5	chr22:31609200-31613800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr22:31609200-31613800	Weak transcription	NH-A	brain
7	chr22:31609200-31614400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr22:31609200-31614600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr22:31609200-31615000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr22:31609200-31616200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr22:31609200-31619600	Weak transcription	Brain Substantia Nigra	brain
12	chr22:31609200-31629000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr22:31609400-31610600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr22:31609400-31610800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr22:31609400-31611600	Enhancers	Liver	Liver
16	chr22:31609400-31612200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr22:31609400-31612400	Weak transcription	Fetal Muscle Leg	muscle
18	chr22:31609400-31613000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr22:31609400-31613400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr22:31609400-31613800	Weak transcription	NHEK	skin
21	chr22:31609400-31614600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr22:31609400-31614600	Weak transcription	Left Ventricle	heart
23	chr22:31609400-31614800	Weak transcription	NHDF-Ad	bronchial
24	chr22:31609400-31615000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr22:31609400-31616200	Weak transcription	A549	lung
26	chr22:31609400-31617800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr22:31609400-31619000	Weak transcription	HSMM	muscle
28	chr22:31609400-31619600	Weak transcription	Brain Angular Gyrus	brain
29	chr22:31609400-31621800	Weak transcription	Fetal Brain Female	brain
30	chr22:31609400-31625400	Weak transcription	NHLF	lung
31	chr22:31609400-31625400	Weak transcription	Osteobl	bone
32	chr22:31609600-31610600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr22:31609600-31610600	Weak transcription	Pancreas	Pancrea
34	chr22:31609600-31610800	Enhancers	Placenta	Placenta
35	chr22:31609600-31610800	Weak transcription	Fetal Stomach	stomach
36	chr22:31609600-31610800	Weak transcription	Lung	lung
37	chr22:31609600-31612200	Weak transcription	Primary T cells from cord blood	blood
38	chr22:31609600-31612200	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr22:31609600-31612400	Weak transcription	Esophagus	oesophagus
40	chr22:31609600-31612400	Weak transcription	Gastric	stomach
41	chr22:31609600-31612400	Active TSS	Rectal Smooth Muscle	rectum
42	chr22:31609600-31612600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr22:31609600-31612600	Weak transcription	Adipose Nuclei	Adipose
44	chr22:31609600-31612600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr22:31609600-31612600	Weak transcription	Right Atrium	heart
46	chr22:31609600-31613000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr22:31609600-31613400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr22:31609600-31613400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr22:31609600-31613400	Weak transcription	Fetal Heart	heart
50	chr22:31609600-31613400	Weak transcription	K562	blood

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