Variant report

Variant	rs73158601
Chromosome Location	chr22:31790417-31790418
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31790215..31792897-chr22:31793771..31797373,3	K562	blood:
2	chr22:31789927..31791884-chr22:31793432..31795429,2	K562	blood:

Variant related genes	Relation type
ENSG00000185721	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12160763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989274	0.81[EUR][1000 genomes]
rs16989278	0.81[EUR][1000 genomes]
rs16989519	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989617	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989620	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989623	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16989635	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16989638	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs16989650	0.96[EUR][1000 genomes]
rs16989682	0.84[EUR][1000 genomes]
rs16989753	0.81[EUR][1000 genomes]
rs2180142	0.88[EUR][1000 genomes]
rs55806621	0.81[EUR][1000 genomes]
rs55853109	0.81[EUR][1000 genomes]
rs55997441	0.92[EUR][1000 genomes]
rs56136528	1.00[AMR][1000 genomes]
rs56314242	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56385611	0.96[EUR][1000 genomes]
rs60324934	0.84[EUR][1000 genomes]
rs62236168	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62236170	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62236183	0.80[EUR][1000 genomes]
rs62236187	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62236215	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62236218	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62236223	0.92[EUR][1000 genomes]
rs62236224	0.92[EUR][1000 genomes]
rs62236225	0.84[EUR][1000 genomes]
rs62236230	0.84[EUR][1000 genomes]
rs62236231	0.84[EUR][1000 genomes]
rs62236257	0.84[EUR][1000 genomes]
rs62237437	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237446	0.92[EUR][1000 genomes]
rs62237760	0.84[EUR][1000 genomes]
rs62237764	0.81[EUR][1000 genomes]
rs62237766	0.81[EUR][1000 genomes]
rs62237769	0.81[EUR][1000 genomes]
rs62239378	0.86[ASN][1000 genomes]
rs62239379	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160611	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73160614	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73160635	0.84[EUR][1000 genomes]
rs8142821	0.81[EUR][1000 genomes]
rs878654	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9680589	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31790000-31790600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr22:31790200-31790600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr22:31790200-31790800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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