Variant report

Variant	rs62237764
Chromosome Location	chr22:31947393-31947394
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:31936958-31958600..22:32053085-32061138	Hela-S3	cervix:
2	22:31936958-31958600..22:32162110-32166713	GM12878	blood:
3	22:31936958-31958600..22:32292186-32294405	K562	blood:
4	22:31936958-31958600..22:32188129-32210582	K562	blood:
5	22:31936958-31958600..22:33262063-33266567	K562	blood:
6	22:31936958-31958600..22:32477762-32487457	Hela-S3	cervix:
7	22:31936958-31958600..22:32342898-32343477	GM12878	blood:
8	22:31936958-31958600..22:31978142-31983723	K562	blood:
9	chr22:31946590..31949361-chr22:32340204..32341908,2	K562	blood:
10	22:31936958-31958600..22:32764253-32784733	K562	blood:
11	22:31936958-31958600..22:32740683-32750950	Hela-S3	cervix:
12	22:31936958-31958600..22:32170492-32188129	GM12878	blood:
13	22:31936958-31958600..22:32750950-32761732	Hela-S3	cervix:
14	22:31936958-31958600..22:32228866-32235273	K562	blood:
15	22:31864703-31891033..22:31936958-31958600	GM12878	blood:
16	22:31836635-31847259..22:31936958-31958600	GM12878	blood:
17	22:31936958-31958600..22:32868055-32872511	K562	blood:
18	22:31936958-31958600..22:32012966-32043914	GM12878	blood:
19	22:31936958-31958600..22:32264718-32278135	Hela-S3	cervix:
20	22:31936958-31958600..22:32594665-32606395	K562	blood:
21	22:31936958-31958600..22:32860159-32865649	K562	blood:
22	22:31936958-31958600..22:32338420-32342898	K562	blood:

No data

Variant related genes	Relation type
ENSG00000242082	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000271093	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000252909	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000100170	Chromatin interaction
ENSG00000128253	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000254127	Chromatin interaction
ENSG00000198089	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1018487	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12160763	0.81[EUR][1000 genomes]
rs12168645	0.92[EUR][1000 genomes]
rs130089	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989274	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989279	0.83[ASN][1000 genomes]
rs16989312	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989379	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989385	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989427	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989617	0.88[EUR][1000 genomes]
rs16989620	0.88[EUR][1000 genomes]
rs16989623	0.84[EUR][1000 genomes]
rs16989635	0.84[EUR][1000 genomes]
rs16989638	0.84[EUR][1000 genomes]
rs16989650	0.84[EUR][1000 genomes]
rs16989682	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989760	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41302569	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55648708	0.92[EUR][1000 genomes]
rs55684328	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55728055	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55734125	0.84[EUR][1000 genomes]
rs55806621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55844032	0.92[EUR][1000 genomes]
rs55853109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55868468	0.85[AFR][1000 genomes]
rs55916646	0.85[AFR][1000 genomes]
rs55931230	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56112397	0.92[EUR][1000 genomes]
rs56156742	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56211407	0.85[AFR][1000 genomes]
rs56314242	0.81[EUR][1000 genomes]
rs56355520	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56385611	0.84[EUR][1000 genomes]
rs5753700	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57886497	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58365021	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60324934	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60907110	0.83[ASN][1000 genomes]
rs61561528	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62236215	0.84[EUR][1000 genomes]
rs62236218	0.88[EUR][1000 genomes]
rs62236223	0.88[EUR][1000 genomes]
rs62236224	0.88[EUR][1000 genomes]
rs62236225	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236226	0.88[EUR][1000 genomes]
rs62236230	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236231	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236232	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236257	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236258	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237760	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237761	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237765	0.83[ASN][1000 genomes]
rs62237766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237767	0.83[ASN][1000 genomes]
rs62237768	0.83[ASN][1000 genomes]
rs62237769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237770	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237772	0.83[ASN][1000 genomes]
rs62237773	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237774	0.83[ASN][1000 genomes]
rs62237775	0.83[ASN][1000 genomes]
rs62237790	0.92[EUR][1000 genomes]
rs62237793	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237796	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237797	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237798	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237800	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237801	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237808	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62237809	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237812	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237813	0.82[EUR][1000 genomes]
rs62237818	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237829	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237832	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237833	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237834	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237836	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62237837	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62237838	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237841	0.88[EUR][1000 genomes]
rs62237843	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237845	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237849	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62237852	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62239168	0.92[EUR][1000 genomes]
rs62239169	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62239172	0.85[AFR][1000 genomes]
rs62239174	0.85[AFR][1000 genomes]
rs62239180	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62239181	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62239182	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62239183	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62240685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62240689	0.88[EUR][1000 genomes]
rs66666267	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7285091	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7288051	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7290517	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73158601	0.81[EUR][1000 genomes]
rs73160635	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73160655	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73160658	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73160700	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73162112	0.85[AFR][1000 genomes]
rs8139560	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8142355	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8142821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9621295	0.92[EUR][1000 genomes]
rs9680589	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459872	chr22:31833759-31977594	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv588894	chr22:31833759-31977594	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31893400-31971200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr22:31893600-31970000	Weak transcription	Colonic Mucosa	Colon
3	chr22:31905200-31957200	Weak transcription	A549	lung
4	chr22:31925800-31957200	Weak transcription	Brain Angular Gyrus	brain
5	chr22:31926800-31950200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr22:31927400-31961400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr22:31927400-31970000	Weak transcription	NH-A	brain
8	chr22:31927400-31970200	Weak transcription	Fetal Lung	lung
9	chr22:31927400-31979400	Weak transcription	NHDF-Ad	bronchial
10	chr22:31927400-31980000	Weak transcription	HSMMtube	muscle
11	chr22:31927600-31974200	Weak transcription	Small Intestine	intestine
12	chr22:31928200-31948800	Weak transcription	Osteobl	bone
13	chr22:31929000-31953600	Weak transcription	Colon Smooth Muscle	Colon
14	chr22:31929800-31985600	Weak transcription	Fetal Kidney	kidney
15	chr22:31933200-31971000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr22:31933600-31948800	Weak transcription	K562	blood
17	chr22:31933600-31979600	Weak transcription	HUVEC	blood vessel
18	chr22:31934000-31950000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr22:31934000-31981000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr22:31935200-31949000	Weak transcription	Hela-S3	cervix
21	chr22:31935200-31985400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr22:31935400-31957200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr22:31935600-31970000	Weak transcription	HMEC	breast
24	chr22:31935800-32013200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr22:31937000-31948200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr22:31939200-31948000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr22:31939200-31948600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr22:31939800-31950800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr22:31940000-31948800	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr22:31940800-31948000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr22:31941000-31951600	Strong transcription	Thymus	Thymus
32	chr22:31941200-31948400	Strong transcription	Primary T cells from cord blood	blood
33	chr22:31941200-31957200	Weak transcription	Right Ventricle	heart
34	chr22:31941400-31981400	Weak transcription	NHEK	skin
35	chr22:31941800-31948200	Strong transcription	Fetal Thymus	thymus
36	chr22:31942000-31948200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr22:31942000-31948800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr22:31942000-31949000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr22:31942000-31949200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr22:31942000-31949400	Strong transcription	Fetal Stomach	stomach
41	chr22:31942200-31948000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr22:31942600-31948400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr22:31942600-31949200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr22:31942800-31949200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr22:31943000-31948000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr22:31943200-31948800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr22:31943400-31949000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr22:31944200-31948000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr22:31944400-31948200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr22:31944400-31949400	Strong transcription	Dnd41	blood

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