Variant report

Variant	rs62240685
Chromosome Location	chr22:32101649-32101650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32100847-32102727..22:32264718-32278135	GM12878	blood:
2	22:32100847-32102727..22:32338420-32342898	K562	blood:
3	22:32100847-32102727..22:33190123-33206921	GM12878	blood:
4	22:32100847-32102727..22:32162110-32166713	GM12878	blood:
5	22:32096851-32100847..22:32100847-32102727	K562	blood:
6	22:32100847-32102727..22:32228866-32235273	GM12878	blood:
7	22:32100847-32102727..22:32292186-32294405	GM12878	blood:
8	22:31803954-31807204..22:32100847-32102727	GM12878	blood:
9	22:31864703-31891033..22:32100847-32102727	K562	blood:

Variant related genes	Relation type
ENSG00000100234	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000252909	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000184708	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1018487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12168645	1.00[EUR][1000 genomes]
rs130089	0.84[EUR][1000 genomes]
rs16989274	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989278	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989682	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989753	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16989760	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41302569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55648708	1.00[EUR][1000 genomes]
rs55684328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55728055	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55734125	0.92[EUR][1000 genomes]
rs55806621	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55844032	1.00[EUR][1000 genomes]
rs55853109	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55931230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56112397	1.00[EUR][1000 genomes]
rs56156742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56355520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5753700	1.00[EUR][1000 genomes]
rs57886497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57970523	0.87[AFR][1000 genomes]
rs58365021	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58807171	0.86[EUR][1000 genomes]
rs61561528	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62236230	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62236231	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62236232	1.00[AMR][1000 genomes]
rs62236257	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62236258	1.00[AMR][1000 genomes]
rs62237760	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62237761	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62237764	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237766	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237769	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237770	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62237773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237790	1.00[EUR][1000 genomes]
rs62237793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237808	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62237809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237813	0.89[EUR][1000 genomes]
rs62237818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237829	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237836	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237837	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237841	0.96[EUR][1000 genomes]
rs62237843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237849	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62237852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239168	1.00[EUR][1000 genomes]
rs62239169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62239183	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62240689	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs66666267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7285091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7288051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7290517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160635	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73160655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160658	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73160700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8139560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8142355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8142821	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8143064	0.94[AFR][1000 genomes]
rs9621295	1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32073400-32111800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr22:32076600-32107600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32077200-32108000	Weak transcription	Psoas Muscle	Psoas
4	chr22:32077200-32109200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:32078000-32111400	Strong transcription	Fetal Intestine Small	intestine
6	chr22:32078400-32111800	Strong transcription	Fetal Stomach	stomach
7	chr22:32078600-32102200	Strong transcription	Thymus	Thymus
8	chr22:32078800-32102800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr22:32078800-32107800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr22:32079000-32113800	Strong transcription	Fetal Muscle Trunk	muscle
12	chr22:32080400-32121400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
14	chr22:32081600-32110600	Weak transcription	Hela-S3	cervix
15	chr22:32087400-32101800	Strong transcription	Fetal Thymus	thymus
16	chr22:32087400-32103800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr22:32088600-32103400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr22:32089000-32102200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr22:32089000-32102600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr22:32089200-32101800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr22:32089200-32113800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr22:32089400-32126000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr22:32089800-32108000	Weak transcription	A549	lung
24	chr22:32091800-32108200	Weak transcription	Pancreas	Pancrea
25	chr22:32092000-32113800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr22:32092800-32102600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr22:32092800-32102600	Strong transcription	Lung	lung
28	chr22:32093800-32108000	Weak transcription	Fetal Brain Male	brain
29	chr22:32095000-32104400	Strong transcription	Liver	Liver
30	chr22:32095400-32113400	Strong transcription	Fetal Intestine Large	intestine
31	chr22:32095600-32102200	Strong transcription	Primary T cells from cord blood	blood
32	chr22:32096200-32102200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr22:32098200-32107800	Weak transcription	Colonic Mucosa	Colon
34	chr22:32098600-32111600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr22:32099400-32110000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr22:32099600-32105800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr22:32099600-32106200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr22:32099600-32108000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr22:32099600-32108000	Weak transcription	Fetal Kidney	kidney
40	chr22:32099600-32111400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr22:32099800-32108000	Weak transcription	Small Intestine	intestine
42	chr22:32100800-32105800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr22:32100800-32106200	Weak transcription	HepG2	liver
44	chr22:32100800-32106200	Weak transcription	NH-A	brain
45	chr22:32100800-32107800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr22:32100800-32107800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr22:32100800-32108000	Weak transcription	Brain Anterior Caudate	brain
48	chr22:32100800-32108000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr22:32100800-32108000	Weak transcription	K562	blood
50	chr22:32100800-32108800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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