Variant report

Variant	rs55844032
Chromosome Location	chr22:32032975-32032976
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32012966-32043914..22:32347255-32351014	K562	blood:
2	22:31936958-31958600..22:32012966-32043914	GM12878	blood:
3	22:32012966-32043914..22:32513817-32522138	K562	blood:
4	22:31829733-31836635..22:32012966-32043914	GM12878	blood:
5	22:32012966-32043914..22:32665993-32670527	K562	blood:
6	chr22:32027036..32029342-chr22:32032143..32033844,2	MCF-7	breast:
7	22:31930706-31935473..22:32012966-32043914	GM12878	blood:
8	22:32012966-32043914..22:32529813-32538538	K562	blood:
9	chr22:31735875..31738019-chr22:32032337..32033886,2	MCF-7	breast:
10	22:32012966-32043914..22:32846948-32860159	K562	blood:
11	chr22:32025758..32028730-chr22:32031717..32035857,4	K562	blood:
12	22:32012966-32043914..22:32360288-32405313	K562	blood:

No data

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction
ENSG00000229169	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000232707	Chromatin interaction
ENSG00000240647	Chromatin interaction
ENSG00000230866	Chromatin interaction
ENSG00000238910	Chromatin interaction
ENSG00000224050	Chromatin interaction
ENSG00000234479	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000239674	Chromatin interaction

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1018486	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1018487	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018488	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12165609	1.00[ASN][1000 genomes]
rs12168645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130089	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13433626	1.00[ASN][1000 genomes]
rs16989274	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989278	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989279	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16989312	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989334	1.00[ASN][1000 genomes]
rs16989336	1.00[ASN][1000 genomes]
rs16989379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989385	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989617	0.80[EUR][1000 genomes]
rs16989620	0.80[EUR][1000 genomes]
rs16989682	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989753	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989760	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2009893	1.00[ASN][1000 genomes]
rs41302569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45594940	1.00[ASN][1000 genomes]
rs55648708	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55673702	1.00[ASN][1000 genomes]
rs55684328	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55728055	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55734125	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55806621	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55853109	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55868468	1.00[ASN][1000 genomes]
rs55894054	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55916646	1.00[ASN][1000 genomes]
rs55931230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56112397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56150546	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56156742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56211407	1.00[ASN][1000 genomes]
rs56227594	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56298010	1.00[ASN][1000 genomes]
rs56318295	1.00[ASN][1000 genomes]
rs56355520	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56411340	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57103115	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5753700	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57886497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58365021	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58807171	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60324934	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60359561	1.00[ASN][1000 genomes]
rs60907110	0.83[ASN][1000 genomes]
rs61151238	1.00[ASN][1000 genomes]
rs61561528	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62236218	0.80[EUR][1000 genomes]
rs62236223	0.81[EUR][1000 genomes]
rs62236224	0.81[EUR][1000 genomes]
rs62236225	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236226	0.81[EUR][1000 genomes]
rs62236230	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236231	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236232	0.83[ASN][1000 genomes]
rs62236257	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236258	0.83[ASN][1000 genomes]
rs62237760	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237761	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237764	0.92[EUR][1000 genomes]
rs62237765	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237766	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237767	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237768	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237769	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237770	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237772	0.83[ASN][1000 genomes]
rs62237773	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237774	0.83[ASN][1000 genomes]
rs62237775	0.83[ASN][1000 genomes]
rs62237790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237791	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237793	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237794	1.00[ASN][1000 genomes]
rs62237796	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237797	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237798	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237800	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237801	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237806	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237808	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237809	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237812	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237813	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237814	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237818	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237819	1.00[ASN][1000 genomes]
rs62237829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237836	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237837	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237839	1.00[ASN][1000 genomes]
rs62237841	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237844	0.80[AFR][1000 genomes]
rs62237845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237846	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237847	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237848	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237849	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237850	1.00[ASN][1000 genomes]
rs62237852	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237857	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62239168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239169	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239172	1.00[ASN][1000 genomes]
rs62239174	1.00[ASN][1000 genomes]
rs62239180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239182	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239183	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240685	1.00[EUR][1000 genomes]
rs62240689	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6518753	1.00[ASN][1000 genomes]
rs66666267	1.00[EUR][1000 genomes]
rs67935422	1.00[ASN][1000 genomes]
rs7285091	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7285893	1.00[ASN][1000 genomes]
rs7286496	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7287417	1.00[ASN][1000 genomes]
rs7287509	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7287516	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7288051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7290517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7292913	1.00[ASN][1000 genomes]
rs7292915	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7293143	1.00[ASN][1000 genomes]
rs73160635	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73160655	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73160658	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162106	1.00[ASN][1000 genomes]
rs73162112	1.00[ASN][1000 genomes]
rs8137314	1.00[ASN][1000 genomes]
rs8139274	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8139316	0.88[AFR][1000 genomes]
rs8139560	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142002	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8142355	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142821	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9619215	1.00[ASN][1000 genomes]
rs9619217	1.00[ASN][1000 genomes]
rs9621295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621299	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830290	chr22:32011225-32057964	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32027200-32042400	Weak transcription	A549	lung
2	chr22:32027200-32042600	Weak transcription	Thymus	Thymus
3	chr22:32027200-32043400	Weak transcription	Aorta	Aorta
4	chr22:32027400-32033600	Weak transcription	Fetal Kidney	kidney
5	chr22:32027400-32034000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr22:32027400-32034000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr22:32027400-32042200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr22:32027400-32042800	Weak transcription	Fetal Lung	lung
9	chr22:32027600-32033400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr22:32027600-32033400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr22:32027600-32033400	Weak transcription	Gastric	stomach
12	chr22:32027600-32033400	Weak transcription	Right Atrium	heart
13	chr22:32027600-32033600	Weak transcription	Brain Anterior Caudate	brain
14	chr22:32027600-32033600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr22:32027600-32035600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr22:32027600-32035800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr22:32027600-32037000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr22:32027600-32040600	Weak transcription	Ovary	ovary
19	chr22:32027600-32042000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr22:32027600-32042000	Weak transcription	NH-A	brain
21	chr22:32027600-32042200	Weak transcription	Brain Germinal Matrix	brain
22	chr22:32027600-32043200	Weak transcription	HSMMtube	muscle
23	chr22:32027600-32044800	Weak transcription	Small Intestine	intestine
24	chr22:32027800-32033200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr22:32027800-32033400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr22:32027800-32033400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr22:32027800-32033400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr22:32027800-32033400	Weak transcription	NHLF	lung
29	chr22:32027800-32033400	Weak transcription	Osteobl	bone
30	chr22:32027800-32033600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr22:32027800-32033600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr22:32027800-32033600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr22:32027800-32033600	Weak transcription	Brain Substantia Nigra	brain
34	chr22:32027800-32033600	Weak transcription	Fetal Heart	heart
35	chr22:32027800-32033800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr22:32027800-32033800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr22:32027800-32033800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr22:32027800-32034000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr22:32027800-32034000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr22:32027800-32034000	Weak transcription	Fetal Muscle Leg	muscle
41	chr22:32027800-32034000	Weak transcription	Lung	lung
42	chr22:32027800-32034000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr22:32027800-32034000	Weak transcription	HUVEC	blood vessel
44	chr22:32027800-32035200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr22:32027800-32035800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr22:32027800-32037200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr22:32027800-32037200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr22:32027800-32038000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr22:32027800-32039200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr22:32027800-32040600	Weak transcription	H9 Cell Line	embryonic stem cell

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