Variant report

Variant	rs55728055
Chromosome Location	chr22:32093268-32093269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 147 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs1018486	0.83[ASN][1000 genomes]
rs1018487	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018488	1.00[ASN][1000 genomes]
rs12165609	1.00[ASN][1000 genomes]
rs12168645	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs130089	0.83[ASN][1000 genomes]
rs13433626	1.00[ASN][1000 genomes]
rs16989274	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989278	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989279	0.83[ASN][1000 genomes]
rs16989312	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989334	1.00[ASN][1000 genomes]
rs16989336	1.00[ASN][1000 genomes]
rs16989379	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989385	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989427	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989682	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989753	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989760	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2009893	1.00[ASN][1000 genomes]
rs41302569	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45594940	1.00[ASN][1000 genomes]
rs55648708	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55673702	1.00[ASN][1000 genomes]
rs55684328	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55734125	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55806621	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55844032	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55853109	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55868468	1.00[ASN][1000 genomes]
rs55894054	1.00[ASN][1000 genomes]
rs55916646	1.00[ASN][1000 genomes]
rs55931230	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56112397	0.96[EUR][1000 genomes]
rs56150546	1.00[ASN][1000 genomes]
rs56156742	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56211407	1.00[ASN][1000 genomes]
rs56227594	1.00[ASN][1000 genomes]
rs56298010	1.00[ASN][1000 genomes]
rs56318295	1.00[ASN][1000 genomes]
rs56355520	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56411340	1.00[ASN][1000 genomes]
rs57103115	1.00[ASN][1000 genomes]
rs5753700	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57886497	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58365021	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58807171	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60324934	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60359561	1.00[ASN][1000 genomes]
rs60907110	0.83[ASN][1000 genomes]
rs61151238	1.00[ASN][1000 genomes]
rs61561528	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62236225	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236230	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236231	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236232	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62236257	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62236258	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62237760	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237761	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62237764	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62237765	0.83[ASN][1000 genomes]
rs62237766	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237767	0.83[ASN][1000 genomes]
rs62237768	0.83[ASN][1000 genomes]
rs62237769	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237770	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237772	0.83[ASN][1000 genomes]
rs62237773	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237774	0.83[ASN][1000 genomes]
rs62237775	0.83[ASN][1000 genomes]
rs62237790	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237791	1.00[ASN][1000 genomes]
rs62237793	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237794	1.00[ASN][1000 genomes]
rs62237796	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237797	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237798	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237800	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237801	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237806	1.00[ASN][1000 genomes]
rs62237808	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237809	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237812	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237813	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237814	1.00[ASN][1000 genomes]
rs62237818	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237819	1.00[ASN][1000 genomes]
rs62237829	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237832	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237833	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237834	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237836	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237837	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237838	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237839	1.00[ASN][1000 genomes]
rs62237841	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237843	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237845	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237846	1.00[ASN][1000 genomes]
rs62237847	1.00[ASN][1000 genomes]
rs62237848	1.00[ASN][1000 genomes]
rs62237849	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237850	1.00[ASN][1000 genomes]
rs62237852	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237857	1.00[ASN][1000 genomes]
rs62239168	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239169	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239172	1.00[ASN][1000 genomes]
rs62239174	1.00[ASN][1000 genomes]
rs62239180	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239181	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239182	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239183	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62240685	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62240689	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6518753	1.00[ASN][1000 genomes]
rs66666267	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67935422	1.00[ASN][1000 genomes]
rs7285091	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7285893	1.00[ASN][1000 genomes]
rs7286496	1.00[ASN][1000 genomes]
rs7287417	1.00[ASN][1000 genomes]
rs7287509	1.00[ASN][1000 genomes]
rs7287516	1.00[ASN][1000 genomes]
rs7288051	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7290517	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7292913	1.00[ASN][1000 genomes]
rs7292915	1.00[ASN][1000 genomes]
rs7293143	1.00[ASN][1000 genomes]
rs73160635	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73160655	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73160658	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160700	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73162106	1.00[ASN][1000 genomes]
rs73162112	1.00[ASN][1000 genomes]
rs8137314	1.00[ASN][1000 genomes]
rs8139274	1.00[ASN][1000 genomes]
rs8139560	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142002	1.00[ASN][1000 genomes]
rs8142355	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8142821	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8143064	0.83[AFR][1000 genomes]
rs9619215	1.00[ASN][1000 genomes]
rs9619217	1.00[ASN][1000 genomes]
rs9621295	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621299	1.00[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Age-related hearing impairment	24939585	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55728055	YWHAH	cis	occipital cortex	BrainEAC

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32073200-32098600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr22:32073400-32111800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr22:32074400-32100400	Weak transcription	K562	blood
4	chr22:32076600-32107600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr22:32077200-32108000	Weak transcription	Psoas Muscle	Psoas
6	chr22:32077200-32109200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr22:32078000-32111400	Strong transcription	Fetal Intestine Small	intestine
8	chr22:32078400-32093800	Strong transcription	Sigmoid Colon	Sigmoid Colon
9	chr22:32078400-32101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr22:32078400-32101200	Strong transcription	Placenta	Placenta
11	chr22:32078400-32111800	Strong transcription	Fetal Stomach	stomach
12	chr22:32078600-32102200	Strong transcription	Thymus	Thymus
13	chr22:32078800-32094200	Strong transcription	Liver	Liver
14	chr22:32078800-32094200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr22:32078800-32102800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr22:32078800-32107800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr22:32078800-32126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr22:32079000-32099000	Weak transcription	Small Intestine	intestine
19	chr22:32079000-32113800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr22:32080400-32101600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr22:32080400-32121400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr22:32081200-32126400	Weak transcription	Stomach Mucosa	stomach
23	chr22:32081600-32110600	Weak transcription	Hela-S3	cervix
24	chr22:32082000-32093400	Weak transcription	Esophagus	oesophagus
25	chr22:32082800-32097200	Weak transcription	Right Ventricle	heart
26	chr22:32083000-32096200	Weak transcription	Colon Smooth Muscle	Colon
27	chr22:32086400-32093600	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr22:32086400-32101000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr22:32086400-32101200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr22:32087000-32101200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr22:32087000-32101200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr22:32087200-32101200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr22:32087200-32101200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr22:32087200-32101200	Strong transcription	Dnd41	blood
35	chr22:32087400-32094400	Strong transcription	Fetal Lung	lung
36	chr22:32087400-32094800	Strong transcription	Primary T cells from cord blood	blood
37	chr22:32087400-32101000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr22:32087400-32101200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr22:32087400-32101200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr22:32087400-32101200	Strong transcription	Fetal Muscle Leg	muscle
41	chr22:32087400-32101800	Strong transcription	Fetal Thymus	thymus
42	chr22:32087400-32103800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr22:32088000-32094000	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr22:32088000-32101000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr22:32088400-32094000	Strong transcription	Stomach Smooth Muscle	stomach
46	chr22:32088400-32101200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr22:32088600-32093400	Strong transcription	Brain Hippocampus Middle	brain
48	chr22:32088600-32101600	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr22:32088600-32103400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr22:32088800-32094200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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