Variant report

Variant	rs62237768
Chromosome Location	chr22:31959196-31959197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31959003..31960813-chr22:31961085..31962780,2	MCF-7	breast:
2	chr22:31955880..31960409-chr22:32022179..32027539,5	K562	blood:
3	chr22:31958875..31961811-chr22:32027409..32029066,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs1018486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1018487	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1018488	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12165609	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12168645	0.83[ASN][1000 genomes]
rs130089	1.00[ASN][1000 genomes]
rs13433626	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989274	1.00[ASN][1000 genomes]
rs16989278	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16989279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989312	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16989334	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989336	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16989379	0.83[ASN][1000 genomes]
rs16989385	0.83[ASN][1000 genomes]
rs16989427	0.83[ASN][1000 genomes]
rs16989617	0.86[ASN][1000 genomes]
rs16989620	0.86[ASN][1000 genomes]
rs16989623	0.86[ASN][1000 genomes]
rs16989635	0.86[ASN][1000 genomes]
rs16989638	0.86[ASN][1000 genomes]
rs16989650	0.86[ASN][1000 genomes]
rs16989682	1.00[ASN][1000 genomes]
rs16989753	1.00[ASN][1000 genomes]
rs16989760	1.00[ASN][1000 genomes]
rs2009893	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2180142	0.86[ASN][1000 genomes]
rs41302569	0.83[ASN][1000 genomes]
rs45594940	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55648708	0.83[ASN][1000 genomes]
rs55673702	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55684328	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs55728055	0.83[ASN][1000 genomes]
rs55734125	0.83[ASN][1000 genomes]
rs55806621	1.00[ASN][1000 genomes]
rs55844032	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs55853109	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55868468	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55894054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55916646	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55931230	0.83[ASN][1000 genomes]
rs56150546	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56156742	0.83[ASN][1000 genomes]
rs56211407	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56227594	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56298010	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56314242	0.86[ASN][1000 genomes]
rs56318295	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56355520	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56385611	0.86[ASN][1000 genomes]
rs56411340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57103115	0.83[ASN][1000 genomes]
rs5753700	1.00[ASN][1000 genomes]
rs57886497	0.83[ASN][1000 genomes]
rs58365021	0.83[ASN][1000 genomes]
rs58807171	0.83[ASN][1000 genomes]
rs58825043	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60324934	1.00[ASN][1000 genomes]
rs60359561	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60907110	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61151238	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61249659	0.94[EUR][1000 genomes]
rs61561528	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62236215	0.86[ASN][1000 genomes]
rs62236218	0.86[ASN][1000 genomes]
rs62236223	0.86[ASN][1000 genomes]
rs62236224	0.86[ASN][1000 genomes]
rs62236225	1.00[ASN][1000 genomes]
rs62236230	1.00[ASN][1000 genomes]
rs62236231	1.00[ASN][1000 genomes]
rs62236232	1.00[ASN][1000 genomes]
rs62236257	1.00[ASN][1000 genomes]
rs62236258	1.00[ASN][1000 genomes]
rs62237760	1.00[ASN][1000 genomes]
rs62237761	1.00[ASN][1000 genomes]
rs62237764	0.83[ASN][1000 genomes]
rs62237765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237766	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237769	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237770	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237772	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237773	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62237774	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237775	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62237790	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237791	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237793	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237794	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237796	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237797	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237798	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237800	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237801	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237806	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237808	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237809	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237811	0.84[EUR][1000 genomes]
rs62237812	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237813	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237814	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237818	0.83[ASN][1000 genomes]
rs62237819	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237829	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237832	0.83[ASN][1000 genomes]
rs62237833	0.83[ASN][1000 genomes]
rs62237834	0.83[ASN][1000 genomes]
rs62237836	0.83[ASN][1000 genomes]
rs62237837	0.83[ASN][1000 genomes]
rs62237838	0.83[ASN][1000 genomes]
rs62237839	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237841	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237843	0.83[ASN][1000 genomes]
rs62237844	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62237845	0.83[ASN][1000 genomes]
rs62237846	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237847	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237848	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62237849	0.83[ASN][1000 genomes]
rs62237850	0.83[ASN][1000 genomes]
rs62237852	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62237857	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62239168	0.83[ASN][1000 genomes]
rs62239169	0.83[ASN][1000 genomes]
rs62239172	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62239174	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62239180	0.83[ASN][1000 genomes]
rs62239181	0.83[ASN][1000 genomes]
rs62239182	0.83[ASN][1000 genomes]
rs62239183	0.83[ASN][1000 genomes]
rs62240689	0.83[ASN][1000 genomes]
rs6518753	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67935422	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7285091	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7285893	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7286496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7287417	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7287509	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7287516	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7288051	0.83[ASN][1000 genomes]
rs7290517	0.83[ASN][1000 genomes]
rs7292913	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7292915	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7293143	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73160635	1.00[ASN][1000 genomes]
rs73160655	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73160658	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73160700	0.83[ASN][1000 genomes]
rs73162106	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73162112	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8137314	0.83[ASN][1000 genomes]
rs8139274	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8139316	0.91[AFR][1000 genomes]
rs8139560	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8142002	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8142355	0.83[ASN][1000 genomes]
rs8142821	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9619215	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9619217	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9621295	0.83[ASN][1000 genomes]
rs9621299	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9680589	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459872	chr22:31833759-31977594	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv588894	chr22:31833759-31977594	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31893400-31971200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr22:31893600-31970000	Weak transcription	Colonic Mucosa	Colon
3	chr22:31927400-31961400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr22:31927400-31970000	Weak transcription	NH-A	brain
5	chr22:31927400-31970200	Weak transcription	Fetal Lung	lung
6	chr22:31927400-31979400	Weak transcription	NHDF-Ad	bronchial
7	chr22:31927400-31980000	Weak transcription	HSMMtube	muscle
8	chr22:31927600-31974200	Weak transcription	Small Intestine	intestine
9	chr22:31929800-31985600	Weak transcription	Fetal Kidney	kidney
10	chr22:31933200-31971000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr22:31933600-31979600	Weak transcription	HUVEC	blood vessel
12	chr22:31934000-31981000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr22:31935200-31985400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr22:31935600-31970000	Weak transcription	HMEC	breast
15	chr22:31935800-32013200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr22:31941400-31981400	Weak transcription	NHEK	skin
17	chr22:31947000-31970200	Weak transcription	Brain Substantia Nigra	brain
18	chr22:31947000-31970200	Weak transcription	Fetal Muscle Leg	muscle
19	chr22:31947200-31969600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr22:31947400-31968200	Weak transcription	Brain Germinal Matrix	brain
21	chr22:31947400-31968800	Weak transcription	Gastric	stomach
22	chr22:31947400-31968800	Weak transcription	Pancreas	Pancrea
23	chr22:31947400-31969000	Weak transcription	Fetal Brain Female	brain
24	chr22:31947400-31969000	Weak transcription	Lung	lung
25	chr22:31947400-31969200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr22:31947400-31970200	Weak transcription	Ovary	ovary
27	chr22:31947400-31971000	Weak transcription	Aorta	Aorta
28	chr22:31947400-31972800	Weak transcription	Esophagus	oesophagus
29	chr22:31947800-31961800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr22:31947800-31968800	Weak transcription	Spleen	Spleen
31	chr22:31947800-31969000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr22:31947800-31969200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr22:31947800-31970200	Weak transcription	Fetal Intestine Large	intestine
34	chr22:31947800-31970200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr22:31947800-31971000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr22:31947800-31971200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr22:31947800-32009600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr22:31948000-31968400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr22:31948000-31973400	Weak transcription	Liver	Liver
40	chr22:31948200-31968800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr22:31948200-31980000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr22:31949200-31961400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr22:31949200-31971800	Weak transcription	NHLF	lung
44	chr22:31949200-31973400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr22:31949200-31981600	Weak transcription	Left Ventricle	heart
46	chr22:31949400-32014400	Weak transcription	Hela-S3	cervix
47	chr22:31949600-31977800	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr22:31949800-31976400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr22:31950800-31963800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr22:31951000-31959600	Strong transcription	Dnd41	blood

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