The 2.0 version of rSNPBase

Variant report

Variant rs62239174
Chromosome Location chr22:32049299-32049300
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:32034400-32056400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr22:32036400-32050000 Weak transcription Esophagus oesophagus
3 chr22:32036400-32056400 Weak transcription Colonic Mucosa Colon
4 chr22:32037600-32050000 Weak transcription Psoas Muscle Psoas
5 chr22:32041400-32056400 Weak transcription Ovary ovary
6 chr22:32041600-32057400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr22:32042800-32057000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr22:32043000-32057000 Weak transcription H9 Cell Line embryonic stem cell
9 chr22:32043800-32056600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr22:32044000-32056200 Weak transcription Fetal Heart heart
11 chr22:32044000-32056800 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr22:32044200-32049400 Weak transcription Brain Substantia Nigra brain
13 chr22:32044200-32050000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr22:32044200-32056400 Weak transcription Brain Cingulate Gyrus brain
15 chr22:32044200-32056400 Weak transcription Fetal Brain Male brain
16 chr22:32044200-32057000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr22:32044200-32057000 Weak transcription Fetal Kidney kidney
18 chr22:32044400-32050400 Weak transcription Spleen Spleen
19 chr22:32044400-32056400 Weak transcription Brain Inferior Temporal Lobe brain
20 chr22:32044400-32056400 Weak transcription Lung lung
21 chr22:32044400-32057000 Weak transcription HSMMtube muscle
22 chr22:32044600-32056600 Weak transcription HUVEC blood vessel
23 chr22:32045000-32056400 Weak transcription Brain Hippocampus Middle brain
24 chr22:32045000-32057200 Weak transcription Thymus Thymus
25 chr22:32045200-32050000 Weak transcription Gastric stomach
26 chr22:32045200-32054000 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr22:32045200-32056400 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr22:32045200-32057000 Weak transcription Colon Smooth Muscle Colon
29 chr22:32045200-32057200 Weak transcription Aorta Aorta
30 chr22:32045400-32050800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr22:32045400-32056400 Weak transcription Brain Germinal Matrix brain
32 chr22:32045400-32056400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr22:32045400-32056600 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr22:32045400-32057000 Weak transcription iPS-15b Cell Line embryonic stem cell
35 chr22:32045400-32057000 Weak transcription Fetal Lung lung
36 chr22:32045600-32057000 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr22:32046000-32055800 Weak transcription Dnd41 blood
38 chr22:32046000-32056400 Weak transcription Rectal Smooth Muscle rectum
39 chr22:32046000-32056600 Weak transcription Primary B cells from cord blood blood
40 chr22:32046000-32057000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr22:32046000-32057200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr22:32046200-32049600 Weak transcription Pancreas Pancrea
43 chr22:32046200-32050000 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr22:32046200-32056400 Weak transcription Liver Liver
45 chr22:32046200-32056600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr22:32046200-32056800 Weak transcription Stomach Smooth Muscle stomach
47 chr22:32046200-32057000 Weak transcription HUES48 Cell Line embryonic stem cell
48 chr22:32046400-32049400 Weak transcription iPS-20b Cell Line embryonic stem cell
49 chr22:32046400-32050000 Weak transcription Fetal Thymus thymus
50 chr22:32046400-32050200 Enhancers Placenta Placenta

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Last update: Aug 31, 2015