The 2.0 version of rSNPBase

Variant report

Variant rs62239172
Chromosome Location chr22:32047941-32047942
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:32034400-32056400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr22:32036400-32050000 Weak transcription Esophagus oesophagus
3 chr22:32036400-32056400 Weak transcription Colonic Mucosa Colon
4 chr22:32037600-32048400 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr22:32037600-32050000 Weak transcription Psoas Muscle Psoas
6 chr22:32041400-32056400 Weak transcription Ovary ovary
7 chr22:32041600-32057400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr22:32042800-32057000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr22:32043000-32057000 Weak transcription H9 Cell Line embryonic stem cell
10 chr22:32043400-32049200 Weak transcription K562 blood
11 chr22:32043800-32056600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr22:32044000-32056200 Weak transcription Fetal Heart heart
13 chr22:32044000-32056800 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr22:32044200-32049200 Weak transcription Stomach Mucosa stomach
15 chr22:32044200-32049400 Weak transcription Brain Substantia Nigra brain
16 chr22:32044200-32050000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
17 chr22:32044200-32056400 Weak transcription Brain Cingulate Gyrus brain
18 chr22:32044200-32056400 Weak transcription Fetal Brain Male brain
19 chr22:32044200-32057000 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr22:32044200-32057000 Weak transcription Fetal Kidney kidney
21 chr22:32044400-32048200 Weak transcription Right Ventricle heart
22 chr22:32044400-32049200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr22:32044400-32050400 Weak transcription Spleen Spleen
24 chr22:32044400-32056400 Weak transcription Brain Inferior Temporal Lobe brain
25 chr22:32044400-32056400 Weak transcription Lung lung
26 chr22:32044400-32057000 Weak transcription HSMMtube muscle
27 chr22:32044600-32056600 Weak transcription HUVEC blood vessel
28 chr22:32045000-32056400 Weak transcription Brain Hippocampus Middle brain
29 chr22:32045000-32057200 Weak transcription Thymus Thymus
30 chr22:32045200-32050000 Weak transcription Gastric stomach
31 chr22:32045200-32054000 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr22:32045200-32056400 Weak transcription Cortex derived primary cultured neurospheres brain
33 chr22:32045200-32057000 Weak transcription Colon Smooth Muscle Colon
34 chr22:32045200-32057200 Weak transcription Aorta Aorta
35 chr22:32045400-32050800 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr22:32045400-32056400 Weak transcription Brain Germinal Matrix brain
37 chr22:32045400-32056400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr22:32045400-32056600 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr22:32045400-32057000 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr22:32045400-32057000 Weak transcription Fetal Lung lung
41 chr22:32045600-32057000 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr22:32045800-32048000 Enhancers Primary monocytes fromperipheralblood blood
43 chr22:32045800-32048000 Enhancers Hela-S3 cervix
44 chr22:32045800-32048200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr22:32046000-32048400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr22:32046000-32049200 Weak transcription Brain Anterior Caudate brain
47 chr22:32046000-32055800 Weak transcription Dnd41 blood
48 chr22:32046000-32056400 Weak transcription Rectal Smooth Muscle rectum
49 chr22:32046000-32056600 Weak transcription Primary B cells from cord blood blood
50 chr22:32046000-32057000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015