Variant report

Variant	rs62236226
Chromosome Location	chr22:31874806-31874807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:31864703-31891033..22:31936958-31958600	GM12878	blood:
2	22:31864703-31891033..22:31930706-31935473	GM12878	blood:
3	22:31864703-31891033..22:32347255-32351014	K562	blood:

Variant related genes	Relation type
ENSG00000229169	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000238910	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1018487	0.81[EUR][1000 genomes]
rs12168645	0.81[EUR][1000 genomes]
rs130089	0.80[EUR][1000 genomes]
rs16989274	0.88[EUR][1000 genomes]
rs16989278	0.88[EUR][1000 genomes]
rs16989312	0.81[EUR][1000 genomes]
rs16989379	0.81[EUR][1000 genomes]
rs16989385	0.81[EUR][1000 genomes]
rs16989617	0.84[EUR][1000 genomes]
rs16989620	0.84[EUR][1000 genomes]
rs16989623	0.81[EUR][1000 genomes]
rs16989635	0.81[EUR][1000 genomes]
rs16989638	0.81[EUR][1000 genomes]
rs16989650	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16989682	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16989753	0.88[EUR][1000 genomes]
rs16989760	0.81[EUR][1000 genomes]
rs2180142	0.82[AFR][1000 genomes]
rs41302569	0.81[EUR][1000 genomes]
rs55648708	0.81[EUR][1000 genomes]
rs55684328	0.81[EUR][1000 genomes]
rs55806621	0.88[EUR][1000 genomes]
rs55844032	0.81[EUR][1000 genomes]
rs55853109	0.88[EUR][1000 genomes]
rs55931230	0.81[EUR][1000 genomes]
rs56112397	0.81[EUR][1000 genomes]
rs56156742	0.81[EUR][1000 genomes]
rs56355520	0.81[EUR][1000 genomes]
rs56385611	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs5753700	0.81[EUR][1000 genomes]
rs57886497	0.81[EUR][1000 genomes]
rs60324934	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62236215	0.81[EUR][1000 genomes]
rs62236218	0.84[EUR][1000 genomes]
rs62236223	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62236224	0.85[EUR][1000 genomes]
rs62236225	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62236230	0.92[EUR][1000 genomes]
rs62236231	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62236232	0.96[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62236257	0.92[EUR][1000 genomes]
rs62236258	0.81[EUR][1000 genomes]
rs62237760	0.92[EUR][1000 genomes]
rs62237761	0.80[EUR][1000 genomes]
rs62237764	0.88[EUR][1000 genomes]
rs62237766	0.88[EUR][1000 genomes]
rs62237769	0.88[EUR][1000 genomes]
rs62237770	0.81[EUR][1000 genomes]
rs62237773	0.81[EUR][1000 genomes]
rs62237790	0.81[EUR][1000 genomes]
rs62237793	0.81[EUR][1000 genomes]
rs62237796	0.81[EUR][1000 genomes]
rs62237797	0.81[EUR][1000 genomes]
rs62237798	0.81[EUR][1000 genomes]
rs62237800	0.81[EUR][1000 genomes]
rs62237801	0.81[EUR][1000 genomes]
rs62237809	0.81[EUR][1000 genomes]
rs62237812	0.81[EUR][1000 genomes]
rs62237818	0.81[EUR][1000 genomes]
rs62237829	0.81[EUR][1000 genomes]
rs62237832	0.81[EUR][1000 genomes]
rs62237833	0.81[EUR][1000 genomes]
rs62237834	0.81[EUR][1000 genomes]
rs62237838	0.81[EUR][1000 genomes]
rs62237843	0.81[EUR][1000 genomes]
rs62237845	0.81[EUR][1000 genomes]
rs62237852	0.81[EUR][1000 genomes]
rs62239168	0.81[EUR][1000 genomes]
rs62239169	0.81[EUR][1000 genomes]
rs62239180	0.81[EUR][1000 genomes]
rs62239181	0.81[EUR][1000 genomes]
rs62239182	0.81[EUR][1000 genomes]
rs66666267	0.81[EUR][1000 genomes]
rs7285091	0.81[EUR][1000 genomes]
rs7288051	0.81[EUR][1000 genomes]
rs7290517	0.81[EUR][1000 genomes]
rs73160635	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73160655	0.81[EUR][1000 genomes]
rs73160700	0.81[EUR][1000 genomes]
rs8139560	0.81[EUR][1000 genomes]
rs8142355	0.81[EUR][1000 genomes]
rs8142821	0.88[EUR][1000 genomes]
rs9621295	0.81[EUR][1000 genomes]
rs9680589	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063634	chr22:31797004-31921254	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv459872	chr22:31833759-31977594	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv588894	chr22:31833759-31977594	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv1060776	chr22:31869892-31900359	Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31797000-31884400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:31797000-31884400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr22:31815000-31883400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr22:31823600-31884600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr22:31847600-31881800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr22:31848800-31883000	Weak transcription	Fetal Heart	heart
7	chr22:31850800-31876800	Weak transcription	Esophagus	oesophagus
8	chr22:31854800-31884600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr22:31856800-31885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr22:31858200-31877800	Weak transcription	Fetal Brain Male	brain
11	chr22:31858400-31884600	Weak transcription	Psoas Muscle	Psoas
12	chr22:31859000-31875200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr22:31859400-31883800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr22:31859400-31884800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr22:31860000-31882600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr22:31860200-31875800	Weak transcription	Brain Angular Gyrus	brain
17	chr22:31860200-31884800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr22:31863000-31877600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr22:31863400-31879400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr22:31864000-31875000	Weak transcription	Fetal Kidney	kidney
21	chr22:31864200-31875600	Weak transcription	HMEC	breast
22	chr22:31864400-31877600	Weak transcription	Small Intestine	intestine
23	chr22:31864400-31879800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr22:31864400-31884400	Weak transcription	Brain Substantia Nigra	brain
25	chr22:31864400-31884600	Weak transcription	Aorta	Aorta
26	chr22:31864600-31884600	Weak transcription	Right Ventricle	heart
27	chr22:31865200-31876800	Weak transcription	Gastric	stomach
28	chr22:31865400-31877000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr22:31865600-31876000	Weak transcription	Fetal Lung	lung
30	chr22:31865600-31877200	Weak transcription	K562	blood
31	chr22:31865600-31877200	Weak transcription	NHLF	lung
32	chr22:31865800-31876600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr22:31865800-31877000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr22:31865800-31877400	Weak transcription	Spleen	Spleen
35	chr22:31865800-31877600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr22:31865800-31880000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr22:31866800-31877000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr22:31867200-31876000	Weak transcription	Brain Hippocampus Middle	brain
39	chr22:31867400-31876800	Weak transcription	Brain Anterior Caudate	brain
40	chr22:31867400-31880800	Weak transcription	Colon Smooth Muscle	Colon
41	chr22:31867600-31875000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr22:31867600-31875200	Weak transcription	Thymus	Thymus
43	chr22:31867600-31884600	Weak transcription	Pancreas	Pancrea
44	chr22:31868800-31884200	Strong transcription	HSMM	muscle
45	chr22:31870000-31883400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr22:31870400-31883600	Strong transcription	Fetal Intestine Large	intestine
47	chr22:31870800-31878200	Strong transcription	HepG2	liver
48	chr22:31870800-31879400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr22:31870800-31879800	Strong transcription	Dnd41	blood
50	chr22:31870800-31883600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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