Variant report

Variant	rs62236170
Chromosome Location	chr22:31737436-31737437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31737150..31739439-chr22:31822511..31824172,2	MCF-7	breast:
2	chr22:31697207..31699119-chr22:31737066..31739002,2	K562	blood:
3	chr22:31736345..31738425-chr22:31795224..31798140,2	K562	blood:
4	chr22:31684664..31691252-chr22:31735490..31744100,29	MCF-7	breast:
5	chr22:31735875..31738019-chr22:32032337..32033886,2	MCF-7	breast:
6	chr22:31700681..31703376-chr22:31737373..31738951,2	K562	blood:
7	chr22:31683915..31694680-chr22:31733392..31744713,34	MCF-7	breast:
8	chr22:31736945..31739713-chr22:32022907..32024552,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIK3IP1-1	chr22:31736663-31737669	NONHSAT084880

No data

Variant related genes	Relation type
ENSG00000100100	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000185721	Chromatin interaction
ENSG00000228839	Chromatin interaction
ENSG00000212542	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12160763	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16989519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16989617	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16989620	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16989623	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989635	0.88[EUR][1000 genomes]
rs16989638	0.88[EUR][1000 genomes]
rs16989650	0.88[EUR][1000 genomes]
rs17833442	0.80[EUR][1000 genomes]
rs2180142	0.80[EUR][1000 genomes]
rs55997441	1.00[EUR][1000 genomes]
rs56136528	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56314242	0.92[EUR][1000 genomes]
rs56385611	0.88[EUR][1000 genomes]
rs62236168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62236171	0.80[EUR][1000 genomes]
rs62236187	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62236215	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62236218	0.84[EUR][1000 genomes]
rs62236223	0.85[EUR][1000 genomes]
rs62236224	0.85[EUR][1000 genomes]
rs62237437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237446	1.00[EUR][1000 genomes]
rs62239378	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62239379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73158601	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73160611	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73160614	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs878654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9680589	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31717200-31737600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr22:31718000-31737800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr22:31718200-31737600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr22:31719000-31738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr22:31719600-31737800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr22:31719600-31738200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr22:31719800-31738800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr22:31720600-31738000	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr22:31720800-31737800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr22:31721000-31738000	Strong transcription	Rectal Smooth Muscle	rectum
11	chr22:31721600-31739400	Weak transcription	Psoas Muscle	Psoas
12	chr22:31724600-31738200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr22:31725400-31737800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr22:31728200-31738400	Strong transcription	Primary B cells from cord blood	blood
15	chr22:31729000-31739000	Weak transcription	Hela-S3	cervix
16	chr22:31730600-31738000	Strong transcription	Adipose Nuclei	Adipose
17	chr22:31730800-31738400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr22:31731200-31738800	Weak transcription	Right Atrium	heart
19	chr22:31731200-31739000	Weak transcription	Small Intestine	intestine
20	chr22:31731200-31739600	Weak transcription	K562	blood
21	chr22:31731600-31738800	Weak transcription	HSMMtube	muscle
22	chr22:31732200-31737800	Weak transcription	Fetal Kidney	kidney
23	chr22:31732400-31738000	Genic enhancers	Fetal Intestine Large	intestine
24	chr22:31733000-31737800	Genic enhancers	Fetal Intestine Small	intestine
25	chr22:31733000-31738000	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr22:31733000-31739000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr22:31733000-31739000	Strong transcription	A549	lung
28	chr22:31733200-31738400	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr22:31733200-31738400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr22:31733200-31738800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr22:31733200-31739000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr22:31733200-31739000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr22:31733200-31739000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr22:31733200-31739400	Genic enhancers	Primary T cells fromperipheralblood	blood
35	chr22:31733400-31738000	Strong transcription	HUVEC	blood vessel
36	chr22:31733400-31738200	Genic enhancers	Dnd41	blood
37	chr22:31733400-31738800	Weak transcription	NH-A	brain
38	chr22:31733400-31739000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr22:31733600-31738000	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr22:31733600-31738800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr22:31733800-31737800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr22:31733800-31739000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr22:31733800-31739200	Weak transcription	HMEC	breast
44	chr22:31734000-31737800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr22:31734000-31738000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr22:31734400-31738800	Genic enhancers	Brain Cingulate Gyrus	brain
47	chr22:31734400-31738800	Genic enhancers	Brain Hippocampus Middle	brain
48	chr22:31734400-31739200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr22:31734800-31738800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr22:31735000-31738200	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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