Variant report

Variant	rs62236168
Chromosome Location	chr22:31727470-31727471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31718245..31720298-chr22:31725260..31727766,3	MCF-7	breast:
2	chr22:31722169..31724178-chr22:31726123..31728271,2	MCF-7	breast:
3	chr22:31722952..31725262-chr22:31725598..31728239,2	K562	blood:
4	chr22:31717116..31718707-chr22:31727268..31729171,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12160763	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989519	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989617	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16989620	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16989623	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16989635	0.88[EUR][1000 genomes]
rs16989638	0.88[EUR][1000 genomes]
rs16989650	0.88[EUR][1000 genomes]
rs17833442	0.80[EUR][1000 genomes]
rs2180142	0.80[EUR][1000 genomes]
rs55997441	1.00[EUR][1000 genomes]
rs56136528	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56314242	0.92[EUR][1000 genomes]
rs56385611	0.88[EUR][1000 genomes]
rs62236170	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62236171	0.80[EUR][1000 genomes]
rs62236187	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62236215	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62236218	0.84[EUR][1000 genomes]
rs62236223	0.85[EUR][1000 genomes]
rs62236224	0.85[EUR][1000 genomes]
rs62237437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62237446	1.00[EUR][1000 genomes]
rs62239378	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62239379	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158601	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73160611	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73160614	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs878654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9680589	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31710000-31737000	Weak transcription	Fetal Heart	heart
2	chr22:31716400-31735600	Strong transcription	Primary T cells from cord blood	blood
3	chr22:31717000-31731600	Strong transcription	Fetal Brain Female	brain
4	chr22:31717200-31735200	Strong transcription	Thymus	Thymus
5	chr22:31717200-31737600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr22:31717400-31730200	Strong transcription	Fetal Intestine Small	intestine
7	chr22:31717400-31733200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr22:31717400-31734400	Strong transcription	Brain Germinal Matrix	brain
9	chr22:31717600-31736800	Strong transcription	Fetal Thymus	thymus
10	chr22:31717800-31732400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr22:31717800-31736000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr22:31718000-31731600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr22:31718000-31732800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr22:31718000-31736800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr22:31718000-31737800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr22:31718200-31735000	Strong transcription	Fetal Stomach	stomach
17	chr22:31718200-31735800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr22:31718200-31737600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr22:31718600-31735800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr22:31718800-31732200	Strong transcription	H9 Cell Line	embryonic stem cell
21	chr22:31718800-31733200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr22:31719000-31728000	Weak transcription	Osteobl	bone
23	chr22:31719000-31729400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr22:31719000-31729800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr22:31719000-31732800	Strong transcription	HepG2	liver
26	chr22:31719000-31733400	Strong transcription	Dnd41	blood
27	chr22:31719000-31733800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr22:31719000-31736000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr22:31719000-31738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr22:31719200-31728400	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr22:31719600-31728200	Weak transcription	Hela-S3	cervix
32	chr22:31719600-31735400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr22:31719600-31737800	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr22:31719600-31738200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr22:31719800-31730200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr22:31719800-31735200	Strong transcription	Fetal Lung	lung
37	chr22:31719800-31738800	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr22:31720000-31728600	Strong transcription	Brain Cingulate Gyrus	brain
39	chr22:31720000-31729800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr22:31720000-31730200	Strong transcription	Adipose Nuclei	Adipose
41	chr22:31720000-31730600	Weak transcription	K562	blood
42	chr22:31720000-31731200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr22:31720000-31732200	Strong transcription	Spleen	Spleen
44	chr22:31720000-31732400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr22:31720200-31732400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr22:31720600-31738000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr22:31720800-31729000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr22:31720800-31730400	Strong transcription	Lung	lung
49	chr22:31720800-31732000	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr22:31720800-31735400	Strong transcription	H1 Cell Line	embryonic stem cell

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