Variant report
| Variant | rs62278296 |
|---|---|
| Chromosome Location | chr3:161229221-161229222 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs62278346 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62279582 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62279583 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62279584 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62279586 | 0.83[AMR][1000 genomes] |
| rs62279589 | 0.87[EUR][1000 genomes] |
| rs62279591 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs62279616 | 0.90[EUR][1000 genomes] |
| rs62279623 | 0.90[EUR][1000 genomes] |
| rs62279624 | 0.90[EUR][1000 genomes] |
| rs62279626 | 0.90[EUR][1000 genomes] |
| rs62279627 | 0.90[EUR][1000 genomes] |
| rs62279628 | 0.90[EUR][1000 genomes] |
| rs62279629 | 0.90[EUR][1000 genomes] |
| rs62279631 | 0.90[EUR][1000 genomes] |
| rs62279632 | 0.90[EUR][1000 genomes] |
| rs62279657 | 0.90[EUR][1000 genomes] |
| rs62281362 | 0.90[EUR][1000 genomes] |
| rs62281364 | 0.90[EUR][1000 genomes] |
| rs62281365 | 0.90[EUR][1000 genomes] |
| rs62281366 | 0.90[EUR][1000 genomes] |
| rs62281463 | 0.83[AMR][1000 genomes] |
| rs62281466 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv877710 | chr3:161087857-161245414 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 84 gene(s) | inside rSNPs | diseases |
| 3 | nsv829773 | chr3:161150422-161315189 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161227000-161229800 | Enhancers | Dnd41 | blood |
