Variant report

Variant	rs62279632
Chromosome Location	chr3:161360833-161360834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161354917..161360014-chr3:161360082..161365935,6	MCF-7	breast:
2	chr3:161354763..161357600-chr3:161359609..161362263,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs62278296	0.90[EUR][1000 genomes]
rs62278346	0.97[EUR][1000 genomes]
rs62279582	0.97[EUR][1000 genomes]
rs62279583	0.97[EUR][1000 genomes]
rs62279584	0.97[EUR][1000 genomes]
rs62279589	0.90[EUR][1000 genomes]
rs62279591	0.97[EUR][1000 genomes]
rs62279616	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279623	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279624	1.00[EUR][1000 genomes]
rs62279626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279627	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279656	0.89[AMR][1000 genomes]
rs62279657	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62281362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62281364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62281365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62281366	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62281466	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755105	chr3:161349991-161371789	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2754526	chr3:161353644-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1012553	chr3:161354221-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161356000-161362800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:161358400-161361800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:161358800-161361000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:161359000-161361000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:161360400-161361800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:161360800-161361000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:161360800-161361000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:161360800-161361200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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