Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160889184..160889706-chr3:161286958..161287780,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs62278296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62278346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279586	0.83[AMR][1000 genomes]
rs62279589	0.93[EUR][1000 genomes]
rs62279591	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279616	0.97[EUR][1000 genomes]
rs62279623	0.97[EUR][1000 genomes]
rs62279624	0.97[EUR][1000 genomes]
rs62279626	0.97[EUR][1000 genomes]
rs62279627	0.97[EUR][1000 genomes]
rs62279628	0.97[EUR][1000 genomes]
rs62279629	0.97[EUR][1000 genomes]
rs62279631	0.97[EUR][1000 genomes]
rs62279632	0.97[EUR][1000 genomes]
rs62279657	0.90[EUR][1000 genomes]
rs62281362	0.97[EUR][1000 genomes]
rs62281364	0.97[EUR][1000 genomes]
rs62281365	0.97[EUR][1000 genomes]
rs62281366	0.97[EUR][1000 genomes]
rs62281463	0.83[AMR][1000 genomes]
rs62281466	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161278400-161289400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:161286800-161294800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:161287000-161294600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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