Variant report

Variant	rs62279591
Chromosome Location	chr3:161302495-161302496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs62278296	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62278346	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279582	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279583	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279584	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62279586	1.00[AMR][1000 genomes]
rs62279589	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62279616	0.97[EUR][1000 genomes]
rs62279623	0.97[EUR][1000 genomes]
rs62279624	0.97[EUR][1000 genomes]
rs62279626	0.97[EUR][1000 genomes]
rs62279627	0.97[EUR][1000 genomes]
rs62279628	0.97[EUR][1000 genomes]
rs62279629	0.97[EUR][1000 genomes]
rs62279631	0.97[EUR][1000 genomes]
rs62279632	0.97[EUR][1000 genomes]
rs62279657	0.90[EUR][1000 genomes]
rs62281362	0.97[EUR][1000 genomes]
rs62281364	0.97[EUR][1000 genomes]
rs62281365	0.97[EUR][1000 genomes]
rs62281366	0.97[EUR][1000 genomes]
rs62281463	1.00[AMR][1000 genomes]
rs62281466	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161299200-161304600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:161299600-161304800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:161302000-161302600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:161302000-161304600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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