Variant report

Variant	rs62281466
Chromosome Location	chr3:161170969-161170970
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2035498	1.00[AFR][1000 genomes]
rs62278296	1.00[EUR][1000 genomes]
rs62278346	0.93[EUR][1000 genomes]
rs62279582	0.93[EUR][1000 genomes]
rs62279583	0.93[EUR][1000 genomes]
rs62279584	0.93[EUR][1000 genomes]
rs62279589	0.87[EUR][1000 genomes]
rs62279591	0.93[EUR][1000 genomes]
rs62279616	0.90[EUR][1000 genomes]
rs62279623	0.90[EUR][1000 genomes]
rs62279624	0.90[EUR][1000 genomes]
rs62279626	0.90[EUR][1000 genomes]
rs62279627	0.90[EUR][1000 genomes]
rs62279628	0.90[EUR][1000 genomes]
rs62279629	0.90[EUR][1000 genomes]
rs62279631	0.90[EUR][1000 genomes]
rs62279632	0.90[EUR][1000 genomes]
rs62279657	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
3	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
4	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv967084	chr3:161163639-161183247	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161170400-161171800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:161170400-161171800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:161170600-161172000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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