Variant report

Variant	rs62306141
Chromosome Location	chr4:101021635-101021636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs62306124	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306133	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62306134	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306136	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306140	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307561	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62307562	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62307563	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62307565	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62307566	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62307567	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62307568	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62307575	0.90[EUR][1000 genomes]
rs72686236	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101015200-101022200	Weak transcription	Fetal Thymus	thymus
3	chr4:101015400-101021800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:101015400-101022000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:101015600-101022200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:101017200-101021800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:101017400-101022000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:101017400-101022400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:101017800-101021800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:101017800-101022000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:101017800-101022000	Weak transcription	Dnd41	blood
12	chr4:101017800-101022200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:101018000-101022200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:101018200-101022200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr4:101019600-101022000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:101020600-101022600	Enhancers	Fetal Intestine Large	intestine
17	chr4:101021000-101021800	Bivalent Enhancer	Primary B cells from cord blood	blood
18	chr4:101021000-101023400	Enhancers	Primary B cells from peripheral blood	blood
19	chr4:101021200-101022800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr4:101021400-101022600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr4:101021400-101022600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:101021400-101022800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:101021400-101023000	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr4:101021600-101021800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:101021600-101022000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:101021600-101024000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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