Variant report

Variant	rs72686236
Chromosome Location	chr4:101002492-101002493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs62306124	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306133	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62306134	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306136	0.96[EUR][1000 genomes]
rs62306140	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306141	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306148	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62307561	0.96[AMR][1000 genomes]
rs62307562	0.96[AMR][1000 genomes]
rs62307563	0.96[AMR][1000 genomes]
rs62307565	0.96[AMR][1000 genomes]
rs62307566	0.96[AMR][1000 genomes]
rs62307567	0.96[AMR][1000 genomes]
rs62307568	0.96[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100997000-101009000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:101002000-101003000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:101002000-101003200	Enhancers	Hela-S3	cervix
4	chr4:101002400-101002800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:101002400-101003200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:101002400-101003200	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links