Variant report

Variant	rs62307565
Chromosome Location	chr4:101053589-101053590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs62306124	1.00[AMR][1000 genomes]
rs62306133	0.96[AMR][1000 genomes]
rs62306134	0.88[AMR][1000 genomes]
rs62306136	0.83[AMR][1000 genomes]
rs62306140	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62306141	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62306148	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62307561	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62307562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62307575	0.94[EUR][1000 genomes]
rs72686236	0.96[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101052400-101053600	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:101052400-101054600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:101053200-101053600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr4:101053400-101053600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:101053400-101054200	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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