Variant report

Variant	rs62306136
Chromosome Location	chr4:101010190-101010191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10516459	0.85[AMR][1000 genomes]
rs17541426	0.85[AMR][1000 genomes]
rs17541690	0.85[AMR][1000 genomes]
rs17613746	0.85[AMR][1000 genomes]
rs17614270	0.95[AMR][1000 genomes]
rs2866181	0.95[AMR][1000 genomes]
rs62305059	0.85[AMR][1000 genomes]
rs62306060	0.85[AMR][1000 genomes]
rs62306063	0.85[AMR][1000 genomes]
rs62306066	0.85[AMR][1000 genomes]
rs62306067	0.85[AMR][1000 genomes]
rs62306068	0.85[AMR][1000 genomes]
rs62306069	0.85[AMR][1000 genomes]
rs62306070	0.85[AMR][1000 genomes]
rs62306071	0.85[AMR][1000 genomes]
rs62306073	0.80[AMR][1000 genomes]
rs62306075	0.80[AMR][1000 genomes]
rs62306084	0.85[AMR][1000 genomes]
rs62306085	0.95[AMR][1000 genomes]
rs62306111	0.95[AMR][1000 genomes]
rs62306113	0.95[AMR][1000 genomes]
rs62306115	0.95[AMR][1000 genomes]
rs62306124	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62306133	0.94[EUR][1000 genomes]
rs62306134	0.96[EUR][1000 genomes]
rs62306140	0.83[EUR][1000 genomes]
rs62306141	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306148	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62307561	0.83[AMR][1000 genomes]
rs62307562	0.83[AMR][1000 genomes]
rs62307563	0.83[AMR][1000 genomes]
rs62307565	0.83[AMR][1000 genomes]
rs62307566	0.83[AMR][1000 genomes]
rs62307567	0.83[AMR][1000 genomes]
rs62307568	0.83[AMR][1000 genomes]
rs62307575	0.85[AMR][1000 genomes]
rs72686236	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101008600-101014000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:101008600-101014200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:101008600-101017800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:101008800-101014200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:101008800-101014200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:101008800-101014200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:101009000-101010200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:101009000-101014400	Weak transcription	NHEK	skin
10	chr4:101009200-101013600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:101009200-101013800	Weak transcription	Fetal Stomach	stomach
12	chr4:101009200-101014400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:101009200-101017600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:101009600-101010200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:101009600-101014400	Weak transcription	Adipose Nuclei	Adipose
16	chr4:101009800-101014400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:101009800-101014400	Weak transcription	Fetal Lung	lung
18	chr4:101009800-101014800	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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