Variant report

Variant	rs62306075
Chromosome Location	chr4:100882816-100882817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100867408..100872938-chr4:100878480..100883746,9	MCF-7	breast:
2	chr4:100881761..100884128-chr4:100889355..100890930,2	K562	blood:

Variant related genes	Relation type
ENSG00000164031	Chromatin interaction
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10516459	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12431	0.83[EUR][1000 genomes]
rs15924	0.83[EUR][1000 genomes]
rs17539582	0.83[EUR][1000 genomes]
rs17539883	0.83[EUR][1000 genomes]
rs17541426	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17541690	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17613746	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17614270	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2866181	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41275723	0.85[EUR][1000 genomes]
rs62305041	0.81[EUR][1000 genomes]
rs62305046	0.85[EUR][1000 genomes]
rs62305052	0.85[EUR][1000 genomes]
rs62305053	0.85[EUR][1000 genomes]
rs62305055	0.85[EUR][1000 genomes]
rs62305056	0.85[EUR][1000 genomes]
rs62305057	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62305059	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306060	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306063	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306066	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306067	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306068	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306069	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306070	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306071	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306072	0.82[EUR][1000 genomes]
rs62306073	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306083	0.82[AMR][1000 genomes]
rs62306084	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306085	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306111	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306113	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306115	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306136	0.80[AMR][1000 genomes]
rs767652	0.83[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100872600-100886000	Weak transcription	Primary T cells from cord blood	blood
2	chr4:100872600-100886000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:100872600-100886200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:100877400-100885400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:100880400-100889600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:100881600-100883000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:100882000-100883200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:100882400-100883000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:100882600-100885400	Weak transcription	Dnd41	blood
10	chr4:100882600-100889000	Weak transcription	Osteobl	bone
11	chr4:100882800-100883200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr4:100882800-100888400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:100882800-100892800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links