Variant report

Variant	rs17614270
Chromosome Location	chr4:100930770-100930771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10516459	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17541426	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17541690	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17613746	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2866181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41275723	0.80[EUR][1000 genomes]
rs62305046	0.80[EUR][1000 genomes]
rs62305052	0.80[EUR][1000 genomes]
rs62305053	0.80[EUR][1000 genomes]
rs62305055	0.80[EUR][1000 genomes]
rs62305056	0.81[EUR][1000 genomes]
rs62305057	0.83[EUR][1000 genomes]
rs62305059	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306060	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306063	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306066	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62306067	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62306068	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62306069	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62306070	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62306071	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62306073	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306075	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306084	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306085	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306113	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62306114	0.82[EUR][1000 genomes]
rs62306115	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306136	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000173	chr4:100928002-100964404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100929200-100930800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:100930000-100930800	Weak transcription	HSMM	muscle
3	chr4:100930000-100939400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:100930600-100930800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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