Variant report

Variant	rs62306066
Chromosome Location	chr4:100875451-100875452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100870166..100873808-chr4:100875168..100878123,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10516459	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12431	0.88[EUR][1000 genomes]
rs15924	0.88[EUR][1000 genomes]
rs17539582	0.88[EUR][1000 genomes]
rs17539883	0.88[EUR][1000 genomes]
rs17541426	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17541690	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17613746	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17614270	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2866181	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41275723	0.90[EUR][1000 genomes]
rs62305041	0.85[EUR][1000 genomes]
rs62305046	0.90[EUR][1000 genomes]
rs62305052	0.90[EUR][1000 genomes]
rs62305053	0.90[EUR][1000 genomes]
rs62305055	0.90[EUR][1000 genomes]
rs62305056	0.90[EUR][1000 genomes]
rs62305057	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62305059	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306060	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306063	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306064	0.85[EUR][1000 genomes]
rs62306067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306072	0.87[EUR][1000 genomes]
rs62306073	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62306075	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306084	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306085	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306111	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62306113	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306115	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306136	0.85[AMR][1000 genomes]
rs767652	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879662	chr4:100849466-100876648	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	nsv879663	chr4:100866460-100876648	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100872600-100876000	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:100872600-100881800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:100872600-100886000	Weak transcription	Primary T cells from cord blood	blood
4	chr4:100872600-100886000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:100872600-100886200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:100873000-100876800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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