Variant report

Variant	rs17539883
Chromosome Location	chr4:100765640-100765641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100765436..100767417-chr4:100773829..100775971,2	MCF-7	breast:
2	chr4:100763005..100767706-chr4:100772545..100776617,4	K562	blood:
3	chr4:100763005..100766209-chr4:100774032..100776506,3	K562	blood:
4	chr4:100759873..100767759-chr4:100869412..100873616,14	K562	blood:
5	chr4:100761665..100767162-chr4:100867929..100872850,8	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

rs_ID	r²[population]
rs10516459	0.95[EUR][1000 genomes]
rs12431	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs15924	0.95[EUR][1000 genomes]
rs17539582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17541426	0.95[EUR][1000 genomes]
rs17541690	0.83[EUR][1000 genomes]
rs17612178	0.87[EUR][1000 genomes]
rs17613746	0.90[EUR][1000 genomes]
rs41275723	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305039	0.87[EUR][1000 genomes]
rs62305041	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62305044	0.83[EUR][1000 genomes]
rs62305046	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305049	0.85[EUR][1000 genomes]
rs62305052	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305053	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305055	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305056	0.93[EUR][1000 genomes]
rs62305057	0.95[EUR][1000 genomes]
rs62305059	0.95[EUR][1000 genomes]
rs62306060	0.95[EUR][1000 genomes]
rs62306061	0.83[EUR][1000 genomes]
rs62306063	0.95[EUR][1000 genomes]
rs62306066	0.88[EUR][1000 genomes]
rs62306067	0.88[EUR][1000 genomes]
rs62306068	0.88[EUR][1000 genomes]
rs62306069	0.88[EUR][1000 genomes]
rs62306070	0.88[EUR][1000 genomes]
rs62306071	0.88[EUR][1000 genomes]
rs62306073	0.85[EUR][1000 genomes]
rs62306075	0.83[EUR][1000 genomes]
rs62306084	0.83[EUR][1000 genomes]
rs62306085	0.83[EUR][1000 genomes]
rs767652	0.95[EUR][1000 genomes]

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100755000-100766400	Strong transcription	Primary B cells from cord blood	blood
2	chr4:100755200-100766400	Weak transcription	Aorta	Aorta
3	chr4:100755400-100776000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:100755600-100766400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:100758600-100766200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:100760200-100766200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:100760200-100777000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:100760200-100777200	Weak transcription	Fetal Thymus	thymus
9	chr4:100760400-100766200	Weak transcription	HMEC	breast
10	chr4:100760600-100767200	Strong transcription	NHEK	skin
11	chr4:100761000-100766400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:100761800-100771200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:100762400-100769000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:100763000-100775600	Weak transcription	Esophagus	oesophagus
16	chr4:100763800-100766200	Weak transcription	Primary T cells from cord blood	blood
17	chr4:100763800-100766200	Weak transcription	Ovary	ovary
18	chr4:100763800-100766400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:100764000-100766600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:100764000-100776800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:100764400-100766200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:100764400-100766200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:100764400-100766200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr4:100764400-100766200	Weak transcription	Fetal Heart	heart
25	chr4:100764400-100768000	Weak transcription	Fetal Intestine Small	intestine
26	chr4:100764400-100768000	Genic enhancers	Monocytes-CD14+_RO01746	blood
27	chr4:100764800-100765800	Strong transcription	Primary hematopoietic stem cells	blood
28	chr4:100764800-100766400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:100765000-100766200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr4:100765000-100766200	Genic enhancers	GM12878-XiMat	blood
31	chr4:100765000-100767600	Genic enhancers	Primary monocytes fromperipheralblood	blood
32	chr4:100765000-100770200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:100765200-100765800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr4:100765200-100767000	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr4:100765400-100765800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr4:100765400-100766200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr4:100765400-100766400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:100765400-100768000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:100765600-100766000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:100765600-100766600	Enhancers	K562	blood
41	chr4:100765600-100767000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr4:100765600-100769000	Enhancers	Primary neutrophils fromperipheralblood	blood

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