Variant report

Variant	rs62305039
Chromosome Location	chr4:100765051-100765052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:100763005..100767706-chr4:100772545..100776617,4	K562	blood:
2	chr4:100761921..100765122-chr4:100767795..100771091,3	K562	blood:
3	chr4:100763005..100766209-chr4:100774032..100776506,3	K562	blood:
4	chr4:100763542..100765122-chr4:100767748..100770119,2	K562	blood:
5	chr4:100763704..100765270-chr4:100815531..100817153,2	K562	blood:
6	chr4:100759873..100767759-chr4:100869412..100873616,14	K562	blood:
7	chr4:100761665..100767162-chr4:100867929..100872850,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000109270	Chromatin interaction
ENSG00000164032	Chromatin interaction

rs_ID	r²[population]
rs10516459	0.83[EUR][1000 genomes]
rs12431	0.83[EUR][1000 genomes]
rs15924	0.83[EUR][1000 genomes]
rs17539582	0.87[EUR][1000 genomes]
rs17539883	0.87[EUR][1000 genomes]
rs17541426	0.83[EUR][1000 genomes]
rs17610893	0.85[AMR][1000 genomes]
rs17610991	0.85[AMR][1000 genomes]
rs17612178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41275723	0.85[EUR][1000 genomes]
rs62305041	0.85[EUR][1000 genomes]
rs62305044	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62305046	0.85[EUR][1000 genomes]
rs62305049	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305052	0.85[EUR][1000 genomes]
rs62305053	0.85[EUR][1000 genomes]
rs62305055	0.85[EUR][1000 genomes]
rs62305056	0.81[EUR][1000 genomes]
rs62305057	0.83[EUR][1000 genomes]
rs62305059	0.83[EUR][1000 genomes]
rs62306060	0.83[EUR][1000 genomes]
rs62306061	0.94[EUR][1000 genomes]
rs62306063	0.83[EUR][1000 genomes]
rs62306064	0.89[EUR][1000 genomes]
rs62306072	0.86[EUR][1000 genomes]
rs767652	0.83[EUR][1000 genomes]

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100745400-100765200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:100747000-100765400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:100752200-100765200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr4:100755000-100766400	Strong transcription	Primary B cells from cord blood	blood
5	chr4:100755200-100766400	Weak transcription	Aorta	Aorta
6	chr4:100755400-100776000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:100755600-100766400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:100756400-100765200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:100756400-100765600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:100758600-100765400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:100758600-100766200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:100760000-100765200	Weak transcription	Spleen	Spleen
13	chr4:100760200-100766200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:100760200-100777000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:100760200-100777200	Weak transcription	Fetal Thymus	thymus
16	chr4:100760400-100766200	Weak transcription	HMEC	breast
17	chr4:100760600-100767200	Strong transcription	NHEK	skin
18	chr4:100761000-100766400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:100761400-100765200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:100761800-100771200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:100762400-100769000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:100763000-100775600	Weak transcription	Esophagus	oesophagus
24	chr4:100763400-100765200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr4:100763400-100765200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:100763800-100766200	Weak transcription	Primary T cells from cord blood	blood
27	chr4:100763800-100766200	Weak transcription	Ovary	ovary
28	chr4:100763800-100766400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:100764000-100766600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:100764000-100776800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:100764200-100765600	Flanking Active TSS	K562	blood
32	chr4:100764400-100766200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:100764400-100766200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:100764400-100766200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:100764400-100766200	Weak transcription	Fetal Heart	heart
36	chr4:100764400-100768000	Weak transcription	Fetal Intestine Small	intestine
37	chr4:100764400-100768000	Genic enhancers	Monocytes-CD14+_RO01746	blood
38	chr4:100764800-100765800	Strong transcription	Primary hematopoietic stem cells	blood
39	chr4:100764800-100766400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:100765000-100766200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:100765000-100766200	Genic enhancers	GM12878-XiMat	blood
42	chr4:100765000-100767600	Genic enhancers	Primary monocytes fromperipheralblood	blood
43	chr4:100765000-100770200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links