Variant report

Variant	rs62305049
Chromosome Location	chr4:100797949-100797950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100797831..100799412-chr4:100812268..100814439,2	K562	blood:
2	chr4:100796548..100800180-chr4:100800813..100805431,5	K562	blood:
3	chr4:100797842..100800668-chr4:100869813..100871834,2	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

rs_ID	r²[population]
rs10516459	0.85[EUR][1000 genomes]
rs12431	0.85[EUR][1000 genomes]
rs15924	0.85[EUR][1000 genomes]
rs17539582	0.85[EUR][1000 genomes]
rs17539883	0.85[EUR][1000 genomes]
rs17541426	0.85[EUR][1000 genomes]
rs17610893	0.80[EUR][1000 genomes]
rs17610991	0.80[EUR][1000 genomes]
rs17612178	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17613746	0.80[EUR][1000 genomes]
rs41275723	0.87[EUR][1000 genomes]
rs62305039	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305041	0.83[EUR][1000 genomes]
rs62305044	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305046	0.87[EUR][1000 genomes]
rs62305052	0.87[EUR][1000 genomes]
rs62305053	0.87[EUR][1000 genomes]
rs62305055	0.87[EUR][1000 genomes]
rs62305056	0.83[EUR][1000 genomes]
rs62305057	0.85[EUR][1000 genomes]
rs62305059	0.85[EUR][1000 genomes]
rs62306060	0.85[EUR][1000 genomes]
rs62306061	0.97[EUR][1000 genomes]
rs62306063	0.85[EUR][1000 genomes]
rs62306064	0.92[EUR][1000 genomes]
rs62306072	0.89[EUR][1000 genomes]
rs767652	0.85[EUR][1000 genomes]

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:100777600-100800800	Weak transcription	Thymus	Thymus
4	chr4:100777800-100799200	Weak transcription	Fetal Thymus	thymus
5	chr4:100777800-100801000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:100778000-100798600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:100778000-100800200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:100778200-100798200	Weak transcription	Placenta	Placenta
9	chr4:100778400-100800600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:100781200-100800800	Weak transcription	Esophagus	oesophagus
11	chr4:100781200-100800800	Weak transcription	Spleen	Spleen
12	chr4:100781200-100801000	Weak transcription	Pancreas	Pancrea
13	chr4:100786400-100798000	Weak transcription	Liver	Liver
14	chr4:100788800-100799600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:100789600-100799400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:100789600-100799600	Weak transcription	Left Ventricle	heart
17	chr4:100789600-100799600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:100789600-100799600	Weak transcription	NH-A	brain
19	chr4:100789600-100800200	Weak transcription	NHLF	lung
20	chr4:100789600-100800600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:100789600-100805200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:100789600-100814200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:100789800-100798600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:100789800-100799000	Weak transcription	NHDF-Ad	bronchial
25	chr4:100789800-100799200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:100789800-100799400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:100789800-100799600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:100789800-100800000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr4:100789800-100800000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:100789800-100800200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr4:100789800-100800200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr4:100789800-100800200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:100789800-100800800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr4:100789800-100800800	Weak transcription	Ovary	ovary
35	chr4:100789800-100800800	Weak transcription	Psoas Muscle	Psoas
36	chr4:100789800-100801600	Weak transcription	Gastric	stomach
37	chr4:100789800-100805200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr4:100790000-100799000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr4:100790000-100799000	Weak transcription	HMEC	breast
40	chr4:100790000-100799600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:100790000-100799600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:100790400-100799400	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:100790400-100799400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:100790400-100814600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:100790600-100798800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:100790600-100799800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:100790600-100800800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr4:100790800-100798000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:100790800-100799200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr4:100792000-100798600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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