Variant report

Variant	rs62306060
Chromosome Location	chr4:100837374-100837375
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100837131..100839848-chr4:100866356..100868236,2	K562	blood:
2	chr4:100832439..100834484-chr4:100837119..100838825,2	MCF-7	breast:
3	chr4:100829396..100833198-chr4:100836822..100839868,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10516459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12431	0.95[EUR][1000 genomes]
rs15924	0.95[EUR][1000 genomes]
rs17539582	0.95[EUR][1000 genomes]
rs17539883	0.95[EUR][1000 genomes]
rs17541426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17541690	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17612178	0.83[EUR][1000 genomes]
rs17613746	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17614270	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2866181	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41275723	0.97[EUR][1000 genomes]
rs62305039	0.83[EUR][1000 genomes]
rs62305041	0.93[EUR][1000 genomes]
rs62305044	0.83[EUR][1000 genomes]
rs62305046	0.97[EUR][1000 genomes]
rs62305049	0.85[EUR][1000 genomes]
rs62305052	0.97[EUR][1000 genomes]
rs62305053	0.97[EUR][1000 genomes]
rs62305055	0.97[EUR][1000 genomes]
rs62305056	0.98[EUR][1000 genomes]
rs62305057	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62305059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306061	0.87[EUR][1000 genomes]
rs62306063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306064	0.83[EUR][1000 genomes]
rs62306066	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306067	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306068	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306069	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306070	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306071	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306072	0.80[EUR][1000 genomes]
rs62306073	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62306075	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306084	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306085	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306111	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62306113	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62306115	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62306136	0.85[AMR][1000 genomes]
rs767652	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100815600-100840000	Weak transcription	Small Intestine	intestine
2	chr4:100816000-100839800	Weak transcription	Esophagus	oesophagus
3	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:100816000-100867000	Weak transcription	Lung	lung
5	chr4:100816200-100837600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:100816200-100838000	Weak transcription	Fetal Stomach	stomach
7	chr4:100816200-100838800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:100816200-100839800	Weak transcription	Aorta	Aorta
9	chr4:100816200-100840200	Weak transcription	Colonic Mucosa	Colon
10	chr4:100816200-100842200	Weak transcription	Pancreas	Pancrea
11	chr4:100816200-100851400	Weak transcription	A549	lung
12	chr4:100816200-100851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:100816200-100853600	Weak transcription	NHLF	lung
14	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:100816400-100837400	Weak transcription	Thymus	Thymus
16	chr4:100816400-100845800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:100816600-100837400	Weak transcription	Fetal Intestine Small	intestine
18	chr4:100816600-100839600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:100816600-100839800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:100816600-100841800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:100816600-100843800	Weak transcription	Right Ventricle	heart
22	chr4:100819000-100838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:100819600-100839800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
25	chr4:100820600-100838400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:100823600-100845600	Weak transcription	Hela-S3	cervix
27	chr4:100823800-100838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:100823800-100839800	Weak transcription	Ovary	ovary
29	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
30	chr4:100824200-100838400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:100824400-100847000	Weak transcription	Brain Angular Gyrus	brain
32	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:100824600-100838600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:100824800-100854200	Weak transcription	Brain Anterior Caudate	brain
35	chr4:100825400-100838600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:100826200-100844000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr4:100827600-100839400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:100827600-100856400	Weak transcription	Brain Substantia Nigra	brain
39	chr4:100827800-100838400	Weak transcription	Brain Germinal Matrix	brain
40	chr4:100827800-100838400	Weak transcription	Colon Smooth Muscle	Colon
41	chr4:100827800-100838600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr4:100827800-100838600	Weak transcription	Fetal Brain Male	brain
43	chr4:100827800-100838600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr4:100827800-100839800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr4:100828000-100838400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr4:100828000-100838400	Weak transcription	NHDF-Ad	bronchial
47	chr4:100828200-100837400	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
49	chr4:100829000-100837400	Weak transcription	Fetal Brain Female	brain
50	chr4:100829000-100838400	Weak transcription	Brain Hippocampus Middle	brain

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