Variant report

Variant	rs62306115
Chromosome Location	chr4:100978301-100978302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10516459	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17541426	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17541690	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17613746	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17614270	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2866181	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62305057	0.81[EUR][1000 genomes]
rs62305059	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62306060	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62306063	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62306066	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306067	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306068	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306069	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306070	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306071	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306073	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62306075	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306084	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306085	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306111	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62306113	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62306114	0.81[EUR][1000 genomes]
rs62306136	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100978000-100979000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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