Variant report

Variant	rs767652
Chromosome Location	chr4:100791805-100791806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100785532..100787668-chr4:100791183..100793656,2	MCF-7	breast:
2	chr4:100791709..100794729-chr4:100795238..100797481,3	MCF-7	breast:
3	chr4:100784934..100787031-chr4:100791036..100792825,2	K562	blood:
4	chr4:100745459..100748215-chr4:100790977..100792734,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000070190	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10516459	0.89[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs12431	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs15924	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17539582	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs17539883	0.95[EUR][1000 genomes]
rs17541426	0.95[EUR][1000 genomes]
rs17541690	0.83[EUR][1000 genomes]
rs17612178	0.83[EUR][1000 genomes]
rs17613746	0.89[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs41275723	0.97[EUR][1000 genomes]
rs62305039	0.83[EUR][1000 genomes]
rs62305041	0.93[EUR][1000 genomes]
rs62305044	0.83[EUR][1000 genomes]
rs62305046	0.97[EUR][1000 genomes]
rs62305049	0.85[EUR][1000 genomes]
rs62305052	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305053	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305055	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62305056	0.93[EUR][1000 genomes]
rs62305057	0.95[EUR][1000 genomes]
rs62305059	0.95[EUR][1000 genomes]
rs62306060	0.95[EUR][1000 genomes]
rs62306061	0.83[EUR][1000 genomes]
rs62306063	0.95[EUR][1000 genomes]
rs62306066	0.88[EUR][1000 genomes]
rs62306067	0.88[EUR][1000 genomes]
rs62306068	0.88[EUR][1000 genomes]
rs62306069	0.88[EUR][1000 genomes]
rs62306070	0.88[EUR][1000 genomes]
rs62306071	0.88[EUR][1000 genomes]
rs62306073	0.90[EUR][1000 genomes]
rs62306075	0.83[EUR][1000 genomes]
rs62306084	0.83[EUR][1000 genomes]
rs62306085	0.83[EUR][1000 genomes]
rs6828260	1.00[ASW][hapmap]
rs72913012	0.81[AFR][1000 genomes]
rs72913018	0.87[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs767652	MGMT	trans	lymphoblastoid	seeQTL

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:100777600-100800800	Weak transcription	Thymus	Thymus
4	chr4:100777800-100799200	Weak transcription	Fetal Thymus	thymus
5	chr4:100777800-100801000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:100778000-100792000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:100778000-100798600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:100778000-100800200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:100778200-100798200	Weak transcription	Placenta	Placenta
10	chr4:100778400-100800600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:100781200-100800800	Weak transcription	Esophagus	oesophagus
12	chr4:100781200-100800800	Weak transcription	Spleen	Spleen
13	chr4:100781200-100801000	Weak transcription	Pancreas	Pancrea
14	chr4:100781400-100795800	Strong transcription	Primary B cells from cord blood	blood
15	chr4:100782800-100792200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:100782800-100793400	Strong transcription	GM12878-XiMat	blood
17	chr4:100783000-100793400	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr4:100783000-100793600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:100783000-100796000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr4:100783200-100793000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:100784400-100793000	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:100784800-100792600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:100786400-100798000	Weak transcription	Liver	Liver
24	chr4:100787800-100797800	Weak transcription	Fetal Lung	lung
25	chr4:100788200-100797800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:100788800-100799600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr4:100789000-100793200	Strong transcription	NHEK	skin
28	chr4:100789600-100799400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:100789600-100799600	Weak transcription	Left Ventricle	heart
30	chr4:100789600-100799600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr4:100789600-100799600	Weak transcription	NH-A	brain
32	chr4:100789600-100800200	Weak transcription	NHLF	lung
33	chr4:100789600-100800600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:100789600-100805200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr4:100789600-100814200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr4:100789800-100796000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:100789800-100797600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:100789800-100798600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr4:100789800-100799000	Weak transcription	NHDF-Ad	bronchial
40	chr4:100789800-100799200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:100789800-100799400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr4:100789800-100799600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr4:100789800-100800000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr4:100789800-100800000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr4:100789800-100800200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr4:100789800-100800200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr4:100789800-100800200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:100789800-100800800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:100789800-100800800	Weak transcription	Ovary	ovary
50	chr4:100789800-100800800	Weak transcription	Psoas Muscle	Psoas

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