Variant report

Variant	rs62305041
Chromosome Location	chr4:100770414-100770415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100765769..100768487-chr4:100770328..100771970,2	MCF-7	breast:
2	chr4:100761921..100765122-chr4:100767795..100771091,3	K562	blood:
3	chr4:100768566..100770766-chr4:100839767..100842129,2	K562	blood:

rs_ID	r²[population]
rs10516459	0.93[EUR][1000 genomes]
rs12431	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs15924	0.93[EUR][1000 genomes]
rs17539582	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17539883	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17541426	0.93[EUR][1000 genomes]
rs17541690	0.81[EUR][1000 genomes]
rs17612178	0.85[EUR][1000 genomes]
rs17613746	0.88[EUR][1000 genomes]
rs41275723	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62305039	0.85[EUR][1000 genomes]
rs62305044	0.81[EUR][1000 genomes]
rs62305046	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62305049	0.83[EUR][1000 genomes]
rs62305052	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62305053	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62305055	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62305056	0.90[EUR][1000 genomes]
rs62305057	0.93[EUR][1000 genomes]
rs62305059	0.93[EUR][1000 genomes]
rs62306060	0.93[EUR][1000 genomes]
rs62306061	0.81[EUR][1000 genomes]
rs62306063	0.93[EUR][1000 genomes]
rs62306066	0.85[EUR][1000 genomes]
rs62306067	0.85[EUR][1000 genomes]
rs62306068	0.85[EUR][1000 genomes]
rs62306069	0.85[EUR][1000 genomes]
rs62306070	0.85[EUR][1000 genomes]
rs62306071	0.85[EUR][1000 genomes]
rs62306073	0.83[EUR][1000 genomes]
rs62306075	0.81[EUR][1000 genomes]
rs62306084	0.81[EUR][1000 genomes]
rs62306085	0.81[EUR][1000 genomes]
rs767652	0.93[EUR][1000 genomes]

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100755400-100776000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:100760200-100777000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:100760200-100777200	Weak transcription	Fetal Thymus	thymus
4	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:100761800-100771200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:100763000-100775600	Weak transcription	Esophagus	oesophagus
7	chr4:100764000-100776800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:100767600-100776800	Weak transcription	HMEC	breast
9	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:100768600-100774800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:100768800-100770600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:100768800-100770800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr4:100768800-100772200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:100768800-100772200	Weak transcription	K562	blood
15	chr4:100768800-100774000	Weak transcription	Primary B cells from cord blood	blood
16	chr4:100768800-100776800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:100769000-100770600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:100769000-100771800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:100769000-100772000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr4:100769000-100772200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:100769000-100773800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr4:100769000-100775200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:100769000-100775400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr4:100769000-100775600	Weak transcription	Primary T cells from cord blood	blood
25	chr4:100769000-100777400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:100769000-100777800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr4:100769200-100770600	Flanking Active TSS	GM12878-XiMat	blood
28	chr4:100769200-100772200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:100769600-100771200	Strong transcription	NHEK	skin
30	chr4:100769800-100771200	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr4:100769800-100776800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:100770000-100770800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:100770000-100771000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr4:100770000-100772000	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr4:100770200-100771600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:100770200-100772000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr4:100770200-100772000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr4:100770200-100772200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:100770400-100770800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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