Variant report
| Variant | rs62307563 |
|---|---|
| Chromosome Location | chr4:101052226-101052227 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000222196 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs62306124 | 1.00[AMR][1000 genomes] |
| rs62306133 | 0.96[AMR][1000 genomes] |
| rs62306134 | 0.88[AMR][1000 genomes] |
| rs62306136 | 0.83[AMR][1000 genomes] |
| rs62306140 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62306141 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62306148 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62307561 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs62307562 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62307565 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62307566 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62307567 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62307568 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62307575 | 0.94[EUR][1000 genomes] |
| rs72686236 | 0.96[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427689 | chr4:100931741-101216531 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv830019 | chr4:101023666-101208908 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:101051200-101052400 | Enhancers | Colon Smooth Muscle | Colon |
