Variant report

Variant	rs62316858
Chromosome Location	chr4:97443332-97443333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10001071	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10007639	0.93[EUR][1000 genomes]
rs10016381	0.93[EUR][1000 genomes]
rs10018992	0.93[EUR][1000 genomes]
rs12512170	0.94[EUR][1000 genomes]
rs12512573	0.93[EUR][1000 genomes]
rs1506314	0.81[EUR][1000 genomes]
rs28433709	0.93[EUR][1000 genomes]
rs28526823	0.91[EUR][1000 genomes]
rs28787639	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28790115	0.93[EUR][1000 genomes]
rs62316829	0.81[EUR][1000 genomes]
rs62316831	0.80[EUR][1000 genomes]
rs62316846	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62316847	0.93[EUR][1000 genomes]
rs62316848	0.93[EUR][1000 genomes]
rs6817554	0.84[EUR][1000 genomes]
rs6830209	0.84[EUR][1000 genomes]
rs6840466	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9307172	0.93[EUR][1000 genomes]
rs9884206	0.93[EUR][1000 genomes]
rs9884371	0.82[EUR][1000 genomes]
rs9884399	0.93[EUR][1000 genomes]
rs9997459	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1007650	chr4:97393803-97485770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97442200-97443600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:97442400-97446400	Weak transcription	Dnd41	blood
3	chr4:97442800-97446000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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