Variant report

Variant	rs6840466
Chromosome Location	chr4:97311763-97311764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:97309756..97312086-chr4:97312168..97315056,2	MCF-7	breast:
2	chr4:97310863..97313458-chr4:97314479..97317370,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10001071	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10007639	0.89[EUR][1000 genomes]
rs10016381	0.89[EUR][1000 genomes]
rs10018992	0.89[EUR][1000 genomes]
rs10856920	0.84[EUR][1000 genomes]
rs12509073	0.84[EUR][1000 genomes]
rs12510118	0.84[EUR][1000 genomes]
rs12512170	0.88[EUR][1000 genomes]
rs12512573	0.89[EUR][1000 genomes]
rs1506314	0.90[EUR][1000 genomes]
rs17025428	0.84[EUR][1000 genomes]
rs28418878	0.86[EUR][1000 genomes]
rs28433709	0.89[EUR][1000 genomes]
rs28526823	0.88[EUR][1000 genomes]
rs28626069	0.86[EUR][1000 genomes]
rs28787639	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28790115	0.89[EUR][1000 genomes]
rs61308071	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62316816	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62316820	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62316821	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62316822	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62316829	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62316831	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62316846	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62316847	0.89[EUR][1000 genomes]
rs62316848	0.89[EUR][1000 genomes]
rs62316858	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6815032	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6815914	0.86[EUR][1000 genomes]
rs6817554	0.93[EUR][1000 genomes]
rs6830209	0.93[EUR][1000 genomes]
rs7682601	0.84[EUR][1000 genomes]
rs9307172	0.89[EUR][1000 genomes]
rs9884206	0.89[EUR][1000 genomes]
rs9884371	0.92[EUR][1000 genomes]
rs9884399	0.89[EUR][1000 genomes]
rs9997459	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011487	chr4:97301762-97393803	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1009685	chr4:97308301-97392056	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97310400-97312200	Enhancers	Dnd41	blood

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