Variant report

Variant	rs61308071
Chromosome Location	chr4:97184158-97184159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10001071	0.84[EUR][1000 genomes]
rs10007639	0.81[EUR][1000 genomes]
rs10016381	0.81[EUR][1000 genomes]
rs10018992	0.81[EUR][1000 genomes]
rs10856920	0.95[EUR][1000 genomes]
rs12509073	0.95[EUR][1000 genomes]
rs12510118	0.95[EUR][1000 genomes]
rs12512573	0.81[EUR][1000 genomes]
rs1506314	0.86[EUR][1000 genomes]
rs17025428	0.95[EUR][1000 genomes]
rs1857891	0.86[EUR][1000 genomes]
rs28418878	0.97[EUR][1000 genomes]
rs28433709	0.81[EUR][1000 genomes]
rs28600943	0.81[EUR][1000 genomes]
rs28626069	0.97[EUR][1000 genomes]
rs28787639	0.84[EUR][1000 genomes]
rs28790115	0.81[EUR][1000 genomes]
rs57196872	0.88[EUR][1000 genomes]
rs62316816	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62316820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62316821	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62316822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62316829	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62316831	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62316846	0.84[EUR][1000 genomes]
rs62316847	0.81[EUR][1000 genomes]
rs62316848	0.81[EUR][1000 genomes]
rs6532594	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6815032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6815914	0.97[EUR][1000 genomes]
rs6817554	0.89[EUR][1000 genomes]
rs6830209	0.89[EUR][1000 genomes]
rs6840466	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6852164	0.80[EUR][1000 genomes]
rs7682601	0.95[EUR][1000 genomes]
rs9307172	0.81[EUR][1000 genomes]
rs9884206	0.81[EUR][1000 genomes]
rs9884371	0.88[EUR][1000 genomes]
rs9884399	0.81[EUR][1000 genomes]
rs9997459	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763381	chr4:97140746-97193871	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97181000-97184200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:97181600-97185000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:97182000-97185000	Weak transcription	Fetal Intestine Large	intestine
4	chr4:97182600-97186600	Weak transcription	Fetal Brain Male	brain
5	chr4:97183600-97185000	Weak transcription	Stomach Mucosa	stomach
6	chr4:97183600-97187800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:97184000-97184200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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