Variant report

Variant	rs17025428
Chromosome Location	chr4:97280514-97280515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10007639	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016381	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018992	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022681	1.00[ASN][1000 genomes]
rs10856920	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498214	1.00[ASN][1000 genomes]
rs12500252	1.00[ASN][1000 genomes]
rs12507410	1.00[ASN][1000 genomes]
rs12509073	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12510118	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512170	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12512573	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395200	1.00[ASN][1000 genomes]
rs1506314	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1857891	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418878	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433709	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28526823	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28600943	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626069	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28790115	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196872	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61308071	0.95[EUR][1000 genomes]
rs62316816	0.86[EUR][1000 genomes]
rs62316820	0.95[EUR][1000 genomes]
rs62316821	0.95[EUR][1000 genomes]
rs62316822	0.95[EUR][1000 genomes]
rs62316829	0.95[EUR][1000 genomes]
rs62316831	0.94[EUR][1000 genomes]
rs62316847	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62316848	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532594	0.80[EUR][1000 genomes]
rs6815032	0.95[EUR][1000 genomes]
rs6815914	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817554	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830209	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840466	0.84[EUR][1000 genomes]
rs6852164	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71605121	0.92[ASN][1000 genomes]
rs7682601	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307172	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884206	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884371	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884399	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997459	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998679	1.00[ASN][1000 genomes]
rs9998994	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97274000-97284600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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