Variant report

Variant	rs12509073
Chromosome Location	chr4:97197128-97197129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10007639	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10016381	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10018992	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10022681	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10856920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12498214	0.86[ASN][1000 genomes]
rs12500252	0.86[ASN][1000 genomes]
rs12507410	0.86[ASN][1000 genomes]
rs12510118	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12512573	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1395200	0.86[ASN][1000 genomes]
rs1506314	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17025428	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1857891	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28418878	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28433709	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28526823	0.86[ASN][1000 genomes]
rs28600943	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28626069	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28790115	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57196872	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61308071	0.95[EUR][1000 genomes]
rs62316816	0.86[EUR][1000 genomes]
rs62316820	0.95[EUR][1000 genomes]
rs62316821	0.95[EUR][1000 genomes]
rs62316822	0.95[EUR][1000 genomes]
rs62316829	0.95[EUR][1000 genomes]
rs62316831	0.94[EUR][1000 genomes]
rs62316847	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62316848	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6532594	0.80[EUR][1000 genomes]
rs6815032	0.95[EUR][1000 genomes]
rs6815914	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6817554	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6830209	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6840466	0.84[EUR][1000 genomes]
rs6852164	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7682601	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9307172	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9884206	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9884371	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9884399	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9997459	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9998679	0.86[ASN][1000 genomes]
rs9998994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv461590	chr4:97197036-97266060	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv594917	chr4:97197036-97266060	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97188000-97198800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:97194800-97199200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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