Variant report

Variant	rs62316820
Chromosome Location	chr4:97214268-97214269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10001071	0.84[EUR][1000 genomes]
rs10007639	0.81[EUR][1000 genomes]
rs10016381	0.81[EUR][1000 genomes]
rs10018992	0.81[EUR][1000 genomes]
rs10856920	0.95[EUR][1000 genomes]
rs12509073	0.95[EUR][1000 genomes]
rs12510118	0.95[EUR][1000 genomes]
rs12512573	0.81[EUR][1000 genomes]
rs1506314	0.86[EUR][1000 genomes]
rs17025428	0.95[EUR][1000 genomes]
rs1857891	0.86[EUR][1000 genomes]
rs28418878	0.97[EUR][1000 genomes]
rs28433709	0.81[EUR][1000 genomes]
rs28600943	0.81[EUR][1000 genomes]
rs28626069	0.97[EUR][1000 genomes]
rs28787639	0.84[EUR][1000 genomes]
rs28790115	0.81[EUR][1000 genomes]
rs57196872	0.88[EUR][1000 genomes]
rs61308071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62316816	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62316821	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62316822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62316829	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62316831	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62316846	0.84[EUR][1000 genomes]
rs62316847	0.81[EUR][1000 genomes]
rs62316848	0.81[EUR][1000 genomes]
rs6532594	0.85[EUR][1000 genomes]
rs6815032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6815914	0.97[EUR][1000 genomes]
rs6817554	0.89[EUR][1000 genomes]
rs6830209	0.89[EUR][1000 genomes]
rs6840466	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6852164	0.80[EUR][1000 genomes]
rs7682601	0.95[EUR][1000 genomes]
rs9307172	0.81[EUR][1000 genomes]
rs9884206	0.81[EUR][1000 genomes]
rs9884371	0.88[EUR][1000 genomes]
rs9884399	0.81[EUR][1000 genomes]
rs9997459	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv461590	chr4:97197036-97266060	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv594917	chr4:97197036-97266060	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3397075	chr4:97213529-97215627	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
11	esv2643179	chr4:97213612-97215174	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
12	esv3490956	chr4:97213978-97215827	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
13	esv3375333	chr4:97214123-97214771	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3347436	chr4:97214191-97214754	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
15	esv3328850	chr4:97214211-97214741	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3490955	chr4:97214229-97214711	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
17	esv3490957	chr4:97214229-97214711	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
18	nsv292055	chr4:97214269-97214326	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97212800-97214800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:97214200-97214600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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