Variant report

Variant	rs28600943
Chromosome Location	chr4:97133418-97133419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10022681	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856920	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498214	1.00[ASN][1000 genomes]
rs12500252	1.00[ASN][1000 genomes]
rs12507410	1.00[ASN][1000 genomes]
rs12509073	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12510118	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395200	1.00[ASN][1000 genomes]
rs1506314	0.81[ASN][1000 genomes]
rs17025428	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857891	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418878	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626069	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196872	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61308071	0.81[EUR][1000 genomes]
rs62316816	0.86[EUR][1000 genomes]
rs62316820	0.81[EUR][1000 genomes]
rs62316821	0.81[EUR][1000 genomes]
rs62316822	0.81[EUR][1000 genomes]
rs62316829	0.81[EUR][1000 genomes]
rs62316831	0.81[EUR][1000 genomes]
rs6532594	0.97[EUR][1000 genomes]
rs6815032	0.81[EUR][1000 genomes]
rs6815914	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817554	1.00[ASN][1000 genomes]
rs6830209	1.00[ASN][1000 genomes]
rs6852164	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682601	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884371	1.00[ASN][1000 genomes]
rs9998679	1.00[ASN][1000 genomes]
rs9998994	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97132600-97133800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:97132800-97133600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:97133200-97133600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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