Variant report

Variant	rs28418878
Chromosome Location	chr4:97279050-97279051
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10001071	0.81[EUR][1000 genomes]
rs10007639	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016381	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018992	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022681	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856920	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498214	1.00[ASN][1000 genomes]
rs12500252	1.00[ASN][1000 genomes]
rs12507410	1.00[ASN][1000 genomes]
rs12509073	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12510118	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512170	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12512573	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395200	1.00[ASN][1000 genomes]
rs1506314	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17025428	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857891	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433709	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28526823	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28600943	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787639	0.81[EUR][1000 genomes]
rs28790115	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196872	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61308071	0.97[EUR][1000 genomes]
rs62316816	0.88[EUR][1000 genomes]
rs62316820	0.97[EUR][1000 genomes]
rs62316821	0.97[EUR][1000 genomes]
rs62316822	0.97[EUR][1000 genomes]
rs62316829	0.97[EUR][1000 genomes]
rs62316831	0.96[EUR][1000 genomes]
rs62316846	0.81[EUR][1000 genomes]
rs62316847	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62316848	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532594	0.81[EUR][1000 genomes]
rs6815032	0.97[EUR][1000 genomes]
rs6815914	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817554	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830209	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840466	0.86[EUR][1000 genomes]
rs6852164	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71605121	0.92[ASN][1000 genomes]
rs7682601	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307172	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884206	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884371	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884399	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997459	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998679	1.00[ASN][1000 genomes]
rs9998994	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97274000-97284600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:97278600-97279400	Enhancers	Dnd41	blood

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