Variant report

Variant	rs9884399
Chromosome Location	chr4:97393442-97393443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10001071	0.96[EUR][1000 genomes]
rs10007639	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016381	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018992	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856920	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498214	1.00[ASN][1000 genomes]
rs12500252	1.00[ASN][1000 genomes]
rs12507410	1.00[ASN][1000 genomes]
rs12509073	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12510118	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512170	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12512573	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1395200	1.00[ASN][1000 genomes]
rs1506314	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17025428	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857891	1.00[ASN][1000 genomes]
rs28418878	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28526823	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626069	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28787639	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs28790115	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57196872	1.00[ASN][1000 genomes]
rs61308071	0.81[EUR][1000 genomes]
rs62316820	0.81[EUR][1000 genomes]
rs62316821	0.81[EUR][1000 genomes]
rs62316822	0.81[EUR][1000 genomes]
rs62316829	0.81[EUR][1000 genomes]
rs62316831	0.80[EUR][1000 genomes]
rs62316846	0.96[EUR][1000 genomes]
rs62316847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62316848	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62316858	0.93[EUR][1000 genomes]
rs6815032	0.81[EUR][1000 genomes]
rs6815914	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817554	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830209	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840466	0.89[EUR][1000 genomes]
rs71605121	0.92[ASN][1000 genomes]
rs7682601	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884206	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884371	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997459	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998679	1.00[ASN][1000 genomes]
rs9998994	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011487	chr4:97301762-97393803	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879634	chr4:97371381-97727113	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv879635	chr4:97389090-97591085	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97392400-97393800	Weak transcription	Fetal Intestine Small	intestine
2	chr4:97392600-97393600	Weak transcription	Fetal Intestine Large	intestine
3	chr4:97392800-97393600	Weak transcription	Stomach Mucosa	stomach

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