Variant report

Variant	rs62316831
Chromosome Location	chr4:97275699-97275700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10001071	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10007639	0.80[EUR][1000 genomes]
rs10016381	0.80[EUR][1000 genomes]
rs10018992	0.80[EUR][1000 genomes]
rs10856920	0.94[EUR][1000 genomes]
rs12509073	0.94[EUR][1000 genomes]
rs12510118	0.94[EUR][1000 genomes]
rs12512573	0.80[EUR][1000 genomes]
rs1506314	0.85[EUR][1000 genomes]
rs17025428	0.94[EUR][1000 genomes]
rs1857891	0.86[EUR][1000 genomes]
rs28418878	0.96[EUR][1000 genomes]
rs28433709	0.80[EUR][1000 genomes]
rs28600943	0.81[EUR][1000 genomes]
rs28626069	0.96[EUR][1000 genomes]
rs28787639	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28790115	0.80[EUR][1000 genomes]
rs57196872	0.87[EUR][1000 genomes]
rs61308071	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62316816	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62316820	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62316821	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62316822	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62316829	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62316846	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62316847	0.80[EUR][1000 genomes]
rs62316848	0.80[EUR][1000 genomes]
rs62316858	0.80[EUR][1000 genomes]
rs6532594	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6815032	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6815914	0.96[EUR][1000 genomes]
rs6817554	0.89[EUR][1000 genomes]
rs6830209	0.89[EUR][1000 genomes]
rs6840466	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7682601	0.94[EUR][1000 genomes]
rs9307172	0.80[EUR][1000 genomes]
rs9884206	0.80[EUR][1000 genomes]
rs9884371	0.87[EUR][1000 genomes]
rs9884399	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97274000-97284600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:97275000-97275800	Enhancers	Brain Substantia Nigra	brain
3	chr4:97275000-97275800	Flanking Active TSS	Dnd41	blood
4	chr4:97275600-97276600	Weak transcription	HUVEC	blood vessel
5	chr4:97275600-97277600	Weak transcription	Fetal Kidney	kidney
6	chr4:97275600-97277800	Weak transcription	Small Intestine	intestine

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