Variant report

Variant	rs62316816
Chromosome Location	chr4:97177081-97177082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10022681	0.84[EUR][1000 genomes]
rs10856920	0.86[EUR][1000 genomes]
rs12509073	0.86[EUR][1000 genomes]
rs12510118	0.86[EUR][1000 genomes]
rs17025428	0.86[EUR][1000 genomes]
rs1857891	0.95[EUR][1000 genomes]
rs28418878	0.88[EUR][1000 genomes]
rs28600943	0.86[EUR][1000 genomes]
rs28626069	0.88[EUR][1000 genomes]
rs57196872	0.97[EUR][1000 genomes]
rs61308071	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62316820	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62316821	0.91[EUR][1000 genomes]
rs62316822	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62316829	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62316831	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6532594	0.90[EUR][1000 genomes]
rs6815032	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6815914	0.88[EUR][1000 genomes]
rs6817554	0.81[EUR][1000 genomes]
rs6830209	0.81[EUR][1000 genomes]
rs6840466	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6852164	0.85[EUR][1000 genomes]
rs7682601	0.86[EUR][1000 genomes]
rs9884371	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830013	chr4:97033125-97204291	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1003868	chr4:97068155-97222544	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470057	chr4:97104880-97311657	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv461589	chr4:97104881-97311657	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv594916	chr4:97104881-97311657	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv879631	chr4:97114706-97263153	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879632	chr4:97118539-97308914	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv879633	chr4:97125086-97263153	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763381	chr4:97140746-97193871	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3468268	chr4:97176054-97178063	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3468269	chr4:97176198-97178004	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:97172200-97183200	Weak transcription	Gastric	stomach
2	chr4:97176600-97181200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links